Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JJC00_RS20100 Genome accession   NZ_CP067102
Coordinates   4305547..4306047 (+) Length   166 a.a.
NCBI ID   WP_027534641.1    Uniprot ID   -
Organism   Bradyrhizobium diazoefficiens strain 36_1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4300547..4311047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJC00_RS20085 (JJC00_20085) - 4302462..4303214 (-) 753 WP_200467706.1 porin family protein -
  JJC00_RS20090 (JJC00_20090) - 4303373..4304119 (-) 747 WP_200467707.1 outer membrane beta-barrel protein -
  JJC00_RS20095 (JJC00_20095) - 4304351..4305112 (-) 762 WP_200467708.1 outer membrane beta-barrel protein -
  JJC00_RS20100 (JJC00_20100) ssb 4305547..4306047 (+) 501 WP_027534641.1 single-stranded DNA-binding protein Machinery gene
  JJC00_RS20105 (JJC00_20105) - 4306250..4306648 (+) 399 WP_200467709.1 DUF2306 domain-containing protein -
  JJC00_RS20110 (JJC00_20110) gyrA 4306817..4309549 (+) 2733 WP_200467710.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17693.65 Da        Isoelectric Point: 6.9877

>NTDB_id=525084 JJC00_RS20100 WP_027534641.1 4305547..4306047(+) (ssb) [Bradyrhizobium diazoefficiens strain 36_1]
MAGSVNKVILVGNLGKDPEIRRTQDGRPIANLSIATSETWRDKNSGERKEKTEWHRVVIFNEGLCKVAEQYLKKGAKVYI
EGALQTRKWTDQSGVEKYSTEVVLQGFNSTLTMLDGRGGGGGGGSFGDEPGGDFGSSGPVSSAPRRAVAAGTGGGRNNDM
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=525084 JJC00_RS20100 WP_027534641.1 4305547..4306047(+) (ssb) [Bradyrhizobium diazoefficiens strain 36_1]
ATGGCGGGAAGCGTCAACAAGGTCATTCTGGTTGGAAATCTCGGCAAGGATCCCGAAATCCGCCGCACCCAGGACGGGCG
GCCGATCGCGAATCTGAGCATCGCCACATCGGAGACCTGGCGCGACAAGAACAGCGGCGAACGCAAGGAAAAGACCGAGT
GGCATCGCGTGGTAATCTTCAATGAAGGTCTCTGCAAGGTCGCCGAGCAGTACCTGAAGAAGGGCGCCAAGGTTTACATC
GAGGGCGCGCTCCAGACCCGCAAATGGACCGACCAGAGCGGCGTGGAGAAGTACTCCACCGAGGTCGTGCTCCAAGGCTT
CAACTCGACCCTGACGATGCTCGACGGCCGCGGCGGTGGCGGGGGAGGCGGCAGCTTCGGCGACGAGCCGGGCGGCGATT
TCGGCTCCTCCGGTCCCGTCAGCAGCGCACCGCGCCGTGCCGTGGCCGCAGGCACCGGCGGTGGCCGCAACAACGACATG
GACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50

100

0.524
  ssb Glaesserella parasuis strain SC1401

44.92

100

0.506
  ssb Neisseria gonorrhoeae MS11

38.462

100

0.422
  ssb Neisseria meningitidis MC58

39.106

100

0.422