Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JJB99_RS19085 Genome accession   NZ_CP067100
Coordinates   4025928..4026422 (+) Length   164 a.a.
NCBI ID   WP_200493888.1    Uniprot ID   -
Organism   Bradyrhizobium diazoefficiens strain 38_8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4020928..4031422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJB99_RS19070 (JJB99_19070) - 4022837..4023625 (-) 789 WP_200493885.1 outer membrane beta-barrel protein -
  JJB99_RS19075 (JJB99_19075) - 4023781..4024479 (-) 699 WP_200493886.1 outer membrane protein -
  JJB99_RS19080 (JJB99_19080) - 4024719..4025498 (-) 780 WP_200493887.1 outer membrane beta-barrel protein -
  JJB99_RS19085 (JJB99_19085) ssb 4025928..4026422 (+) 495 WP_200493888.1 single-stranded DNA-binding protein Machinery gene
  JJB99_RS19090 (JJB99_19090) - 4026624..4027022 (+) 399 WP_200493889.1 DUF2306 domain-containing protein -
  JJB99_RS19095 (JJB99_19095) gyrA 4027191..4029923 (+) 2733 WP_200493890.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17520.48 Da        Isoelectric Point: 6.9877

>NTDB_id=525071 JJB99_RS19085 WP_200493888.1 4025928..4026422(+) (ssb) [Bradyrhizobium diazoefficiens strain 38_8]
MAGSVNKVILVGNLGKDPEIRRTQDGRPIANLSIATSETWRDKNSGERKEKTEWHRVVIFNEGLCKVAEQYLKKGAKVYI
EGALQTRKWTDQSGVEKYSTEVVLQGFNSTLTMLDGRGGGGGGSFGDEPGGDFGSSGPASGAPRRPVAATGGGRNSDMDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=525071 JJB99_RS19085 WP_200493888.1 4025928..4026422(+) (ssb) [Bradyrhizobium diazoefficiens strain 38_8]
ATGGCGGGAAGCGTCAACAAGGTCATTCTGGTTGGAAATCTCGGCAAGGATCCGGAAATCCGCCGCACCCAGGACGGGCG
GCCGATCGCGAATTTGAGCATCGCCACCTCGGAGACCTGGCGCGACAAGAACAGCGGCGAGCGCAAGGAAAAGACCGAGT
GGCACCGCGTCGTGATCTTCAATGAAGGGCTGTGCAAGGTCGCCGAGCAGTACCTGAAGAAGGGCGCCAAGGTTTACATC
GAGGGTGCACTCCAGACCCGCAAATGGACCGACCAGAGCGGCGTCGAGAAGTACTCCACAGAGGTCGTGCTCCAGGGCTT
CAACTCGACCCTGACGATGCTCGACGGCCGCGGCGGCGGGGGAGGCGGCAGCTTCGGCGACGAGCCGGGCGGCGATTTCG
GCTCCTCGGGTCCCGCCAGTGGCGCGCCGCGCCGTCCCGTTGCCGCGACCGGCGGTGGCCGCAACAGCGACATGGATGAC
GATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.149

100

0.543
  ssb Glaesserella parasuis strain SC1401

44.086

100

0.5
  ssb Neisseria meningitidis MC58

40.782

100

0.445
  ssb Neisseria gonorrhoeae MS11

40.782

100

0.445