Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JIO00_RS26250 Genome accession   NZ_CP067098
Coordinates   5793792..5794319 (-) Length   175 a.a.
NCBI ID   WP_010467282.1    Uniprot ID   A0A6L5BQP5
Organism   Pseudomonas sp. SW-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5788792..5799319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JIO00_RS26230 (JIO00_26230) - 5789062..5789490 (+) 429 WP_010467290.1 DUF350 domain-containing protein -
  JIO00_RS26235 (JIO00_26235) - 5789509..5790228 (+) 720 WP_010467288.1 DUF1190 domain-containing protein -
  JIO00_RS26240 (JIO00_26240) - 5790241..5791398 (+) 1158 WP_200667139.1 glutathionylspermidine synthase family protein -
  JIO00_RS26245 (JIO00_26245) - 5791519..5793723 (+) 2205 WP_200667141.1 OsmC domain/YcaO domain-containing protein -
  JIO00_RS26250 (JIO00_26250) ssb 5793792..5794319 (-) 528 WP_010467282.1 single-stranded DNA-binding protein Machinery gene
  JIO00_RS26255 (JIO00_26255) - 5794329..5795726 (-) 1398 WP_083375648.1 MFS transporter -
  JIO00_RS26260 (JIO00_26260) uvrA 5795918..5798752 (+) 2835 WP_010467278.1 excinuclease ABC subunit UvrA -
  JIO00_RS26265 (JIO00_26265) bfr 5798818..5799282 (-) 465 WP_010467276.1 bacterioferritin -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19396.56 Da        Isoelectric Point: 5.9314

>NTDB_id=525036 JIO00_RS26250 WP_010467282.1 5793792..5794319(-) (ssb) [Pseudomonas sp. SW-3]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQSRQAPPPQQAAP
QPAPDFDSFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=525036 JIO00_RS26250 WP_010467282.1 5793792..5794319(-) (ssb) [Pseudomonas sp. SW-3]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACTGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTGGCCGAGATCGCCGGTGAATACCTGCGTAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAGCAGGGCGACCAACAAGGCGGGGGCAATAACTACCAGCAGTCCGCCCCGGCTC
CACGCCAGCAGGCTCCGCGCCCGCAGCAGTCAGCACCGCAGCAGTCGCGTCAGGCTCCGCCTCCACAGCAGGCAGCGCCA
CAACCGGCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L5BQP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.065

100

0.6
  ssb Glaesserella parasuis strain SC1401

46.354

100

0.509
  ssb Neisseria meningitidis MC58

47.514

100

0.491
  ssb Neisseria gonorrhoeae MS11

47.514

100

0.491