Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K5O18_RS08650 Genome accession   NZ_CP081939
Coordinates   1708807..1710021 (+) Length   404 a.a.
NCBI ID   WP_082187264.1    Uniprot ID   A0AAE5WGT1
Organism   Avibacterium paragallinarum strain p4chr1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1703807..1715021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5O18_RS08625 (K5O18_08625) manA 1703912..1705120 (-) 1209 WP_194742981.1 mannose-6-phosphate isomerase, class I -
  K5O18_RS08630 (K5O18_08630) - 1705123..1705677 (-) 555 WP_110479626.1 YobD family protein -
  K5O18_RS08635 (K5O18_08635) - 1705772..1706608 (-) 837 WP_017807081.1 PTS mannose transporter subunit IID -
  K5O18_RS08640 (K5O18_08640) - 1706622..1707425 (-) 804 WP_017807082.1 PTS mannose/fructose/sorbose transporter subunit IIC -
  K5O18_RS08645 (K5O18_08645) manX 1707438..1708421 (-) 984 WP_046097594.1 PTS mannose transporter subunit IIAB -
  K5O18_RS08650 (K5O18_08650) pilC 1708807..1710021 (+) 1215 WP_082187264.1 type II secretion system F family protein Machinery gene
  K5O18_RS08655 (K5O18_08655) pilD 1710018..1710713 (+) 696 WP_110479627.1 A24 family peptidase Machinery gene
  K5O18_RS08660 (K5O18_08660) coaE 1710856..1711479 (+) 624 WP_110479628.1 dephospho-CoA kinase -
  K5O18_RS08665 (K5O18_08665) yacG 1711476..1711679 (+) 204 WP_046097598.1 DNA gyrase inhibitor YacG -
  K5O18_RS08670 (K5O18_08670) - 1711690..1711956 (+) 267 WP_110479629.1 GNAT family N-acetyltransferase -
  K5O18_RS08675 (K5O18_08675) - 1712434..1713795 (+) 1362 WP_110479630.1 sodium:alanine symporter family protein -
  K5O18_RS08680 (K5O18_08680) - 1713947..1714282 (-) 336 WP_017807091.1 carboxymuconolactone decarboxylase family protein -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 46378.18 Da        Isoelectric Point: 9.9694

>NTDB_id=524715 K5O18_RS08650 WP_082187264.1 1708807..1710021(+) (pilC) [Avibacterium paragallinarum strain p4chr1]
MKLFKWKAVNQLQQKQQGMIVAKNEDIAKTLLFNRKLQNIKLQRNWQFSRKPKLNELYEFINQLALLLKAALPLKQSLLL
LQRDCTIIQLNIWISEIISALDSGLSFSQSIEKQGKYFSQQELQLLKVGEMTASLPQVCHNIAQYRQRSLKLKRKVQKIL
LYPIVVFCISSILTILLLVFVVPQFAEMYEANHSQLPSFTVFLIALSELLQTYLLHSILLVVLCVIFIRIRLKHSQRLVR
LKNQCIFYSPILGKITKLSRLINFSGTLSLMLYAKVPLNIALQSFLPKQASWQIQKSYVGDQFLNQAIETALYWLNLGYS
LSDSVSSDFFPLEAQQMLKIGEESGQVAQMLQHISEKYQQDLDHQVDLLSQLLEPMLMLIIGGLIGAVLLGMYLPIFNMG
AMIQ

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=524715 K5O18_RS08650 WP_082187264.1 1708807..1710021(+) (pilC) [Avibacterium paragallinarum strain p4chr1]
ATGAAATTATTTAAATGGAAAGCAGTTAATCAATTGCAACAAAAACAGCAAGGAATGATTGTCGCCAAAAATGAAGATAT
AGCTAAAACGCTCTTATTTAATCGAAAACTACAAAATATTAAGCTACAACGCAACTGGCAATTTTCGCGTAAACCAAAAT
TAAATGAGCTTTATGAATTCATAAATCAATTGGCTCTATTATTGAAAGCGGCTCTTCCGCTTAAACAAAGTTTATTGTTG
TTACAGCGAGATTGTACAATTATTCAATTAAATATCTGGATTAGTGAAATTATTTCTGCATTAGATAGTGGATTAAGCTT
TTCTCAGTCAATAGAAAAACAAGGTAAATATTTTTCTCAACAAGAGTTGCAACTTTTAAAAGTTGGCGAAATGACGGCAT
CACTTCCTCAAGTTTGCCACAATATTGCACAATACCGACAACGCTCATTAAAGTTGAAAAGAAAAGTCCAGAAAATCTTA
CTTTACCCTATAGTTGTGTTTTGTATTTCTTCAATTTTAACCATTCTTTTATTAGTTTTTGTTGTGCCACAATTTGCTGA
GATGTACGAGGCTAATCATAGCCAGTTGCCTTCTTTTACTGTCTTTTTAATTGCATTATCAGAGTTACTACAAACTTATT
TGCTACACAGTATTTTGTTGGTCGTTTTATGTGTTATTTTTATTCGTATACGTTTGAAACATTCTCAGCGTCTTGTGCGA
TTAAAGAACCAGTGTATTTTTTATTCTCCTATATTAGGAAAAATAACAAAACTCTCTCGTCTCATTAATTTTAGCGGGAC
CTTATCTTTAATGTTGTATGCTAAAGTGCCATTAAATATTGCTTTACAGTCTTTTTTACCTAAACAAGCTAGCTGGCAGA
TCCAAAAAAGTTATGTGGGCGATCAATTTTTGAACCAAGCCATAGAAACAGCATTGTATTGGCTGAATTTAGGATATAGC
TTATCTGATAGCGTTTCTAGCGATTTTTTTCCACTTGAAGCTCAGCAAATGTTAAAAATTGGTGAGGAAAGCGGTCAAGT
GGCTCAAATGTTGCAGCATATTTCGGAGAAATATCAACAAGATCTTGATCACCAAGTGGATCTGTTATCCCAATTATTAG
AGCCGATGTTGATGCTAATTATTGGCGGATTGATTGGTGCGGTGCTGCTCGGAATGTACCTCCCTATTTTTAATATGGGA
GCAATGATCCAATGA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(264-395)

Type II secretion system (T2SS), protein F (T2SSF)

(60-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAE5WGT1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

52.605

99.752

0.525
  pilC Haemophilus influenzae 86-028NP

51.613

99.752

0.515
  pilC Glaesserella parasuis strain SC1401

41.646

99.257

0.413