Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   K5O18_RS08655 Genome accession   NZ_CP081939
Coordinates   1710018..1710713 (+) Length   231 a.a.
NCBI ID   WP_110479627.1    Uniprot ID   A0AAE5TGS0
Organism   Avibacterium paragallinarum strain p4chr1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1705018..1715713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5O18_RS08630 (K5O18_08630) - 1705123..1705677 (-) 555 WP_110479626.1 YobD family protein -
  K5O18_RS08635 (K5O18_08635) - 1705772..1706608 (-) 837 WP_017807081.1 PTS mannose transporter subunit IID -
  K5O18_RS08640 (K5O18_08640) - 1706622..1707425 (-) 804 WP_017807082.1 PTS mannose/fructose/sorbose transporter subunit IIC -
  K5O18_RS08645 (K5O18_08645) manX 1707438..1708421 (-) 984 WP_046097594.1 PTS mannose transporter subunit IIAB -
  K5O18_RS08650 (K5O18_08650) pilC 1708807..1710021 (+) 1215 WP_082187264.1 type II secretion system F family protein Machinery gene
  K5O18_RS08655 (K5O18_08655) pilD 1710018..1710713 (+) 696 WP_110479627.1 A24 family peptidase Machinery gene
  K5O18_RS08660 (K5O18_08660) coaE 1710856..1711479 (+) 624 WP_110479628.1 dephospho-CoA kinase -
  K5O18_RS08665 (K5O18_08665) yacG 1711476..1711679 (+) 204 WP_046097598.1 DNA gyrase inhibitor YacG -
  K5O18_RS08670 (K5O18_08670) - 1711690..1711956 (+) 267 WP_110479629.1 GNAT family N-acetyltransferase -
  K5O18_RS08675 (K5O18_08675) - 1712434..1713795 (+) 1362 WP_110479630.1 sodium:alanine symporter family protein -
  K5O18_RS08680 (K5O18_08680) - 1713947..1714282 (-) 336 WP_017807091.1 carboxymuconolactone decarboxylase family protein -
  K5O18_RS08685 (K5O18_08685) - 1714466..1715362 (+) 897 WP_110479631.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26544.68 Da        Isoelectric Point: 8.0787

>NTDB_id=524716 K5O18_RS08655 WP_110479627.1 1710018..1710713(+) (pilD) [Avibacterium paragallinarum strain p4chr1]
MKELASFFFGGLVGAGIFYAVSTFTARLSFTVWNDYCQLFTPQETAMPQTTLTKKKCGHFWYYFFAIGGLFALCVQLNAN
IWAALWWACWLSALIFIGLIDWLYRLISPLLCVWLFLWGLLGAYWQILPFGLEQCVISTVSIFVIFYGLYALCRWGLKKE
MLGEGDCWLVLALGAEIQLEKLPHFVFLASLYGIVFYLIKQRLVKKSHHNATPEIPFAPFLILSALTLVWW

Nucleotide


Download         Length: 696 bp        

>NTDB_id=524716 K5O18_RS08655 WP_110479627.1 1710018..1710713(+) (pilD) [Avibacterium paragallinarum strain p4chr1]
ATGAAGGAACTAGCCAGTTTTTTCTTCGGCGGTTTGGTCGGTGCAGGCATTTTTTATGCCGTTTCAACCTTTACCGCACG
GCTTTCGTTTACTGTATGGAACGATTATTGCCAGCTTTTCACCCCGCAAGAAACCGCAATGCCACAAACAACATTAACAA
AGAAAAAGTGCGGTCATTTCTGGTACTACTTTTTTGCGATTGGTGGTTTATTTGCCCTGTGCGTCCAGCTCAATGCCAAC
ATTTGGGCTGCGTTATGGTGGGCGTGTTGGCTGAGTGCTTTGATTTTTATTGGCTTAATTGACTGGCTTTATCGGCTTAT
TTCCCCCTTGCTGTGTGTTTGGCTTTTCTTGTGGGGATTGCTTGGTGCGTACTGGCAAATTTTGCCTTTCGGCTTGGAGC
AGTGCGTGATTAGTACGGTCAGCATTTTCGTGATTTTTTATGGGCTGTATGCCCTTTGCCGATGGGGATTAAAAAAAGAA
ATGCTCGGCGAGGGCGATTGCTGGTTAGTGCTGGCTCTCGGGGCAGAAATTCAGCTTGAAAAACTACCGCACTTTGTTTT
TTTAGCTAGCCTTTACGGCATTGTTTTTTATTTGATCAAGCAACGCCTCGTTAAAAAATCACACCACAACGCTACCCCCG
AAATCCCCTTTGCCCCGTTTCTTATTCTTTCCGCTTTAACGCTTGTGTGGTGGTAG

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(91-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAE5TGS0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae Rd KW20

37.5

100

0.377
  pilD Haemophilus influenzae 86-028NP

37.611

97.835

0.368