Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | JGE02_RS05265 | Genome accession | NZ_CP067042 |
| Coordinates | 1075680..1076165 (+) | Length | 161 a.a. |
| NCBI ID | WP_005711354.1 | Uniprot ID | - |
| Organism | Lacticaseibacillus rhamnosus strain B6 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1066310..1105867 | 1075680..1076165 | within | 0 |
Gene organization within MGE regions
Location: 1066310..1105867
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JGE02_RS05185 (JGE02_05180) | - | 1066310..1067494 (-) | 1185 | WP_005714751.1 | tyrosine-type recombinase/integrase | - |
| JGE02_RS05195 (JGE02_05185) | - | 1067839..1068840 (-) | 1002 | WP_005714749.1 | hypothetical protein | - |
| JGE02_RS05200 (JGE02_05190) | - | 1068954..1069544 (-) | 591 | WP_020751902.1 | DUF5067 domain-containing protein | - |
| JGE02_RS05205 (JGE02_05195) | - | 1069604..1070026 (-) | 423 | WP_003594164.1 | ImmA/IrrE family metallo-endopeptidase | - |
| JGE02_RS05210 (JGE02_05200) | - | 1070016..1070351 (-) | 336 | WP_005714743.1 | helix-turn-helix domain-containing protein | - |
| JGE02_RS05215 (JGE02_05205) | - | 1070489..1070731 (+) | 243 | WP_005711333.1 | helix-turn-helix domain-containing protein | - |
| JGE02_RS05220 (JGE02_05210) | - | 1070728..1070886 (+) | 159 | WP_005711335.1 | hypothetical protein | - |
| JGE02_RS05225 (JGE02_05215) | - | 1070904..1071635 (+) | 732 | WP_005711337.1 | antA/AntB antirepressor family protein | - |
| JGE02_RS05230 (JGE02_05220) | - | 1071701..1072249 (+) | 549 | WP_005714742.1 | hypothetical protein | - |
| JGE02_RS05235 (JGE02_05225) | - | 1072228..1072458 (+) | 231 | WP_005711341.1 | hypothetical protein | - |
| JGE02_RS13890 | - | 1072462..1072590 (+) | 129 | WP_005711343.1 | hypothetical protein | - |
| JGE02_RS05240 (JGE02_05230) | - | 1072602..1072829 (+) | 228 | WP_005711345.1 | hypothetical protein | - |
| JGE02_RS05245 (JGE02_05235) | - | 1072822..1073025 (+) | 204 | WP_005711347.1 | hypothetical protein | - |
| JGE02_RS05250 (JGE02_05240) | - | 1073036..1073911 (+) | 876 | WP_005711348.1 | recombinase RecT | - |
| JGE02_RS05255 (JGE02_05245) | - | 1073847..1074695 (+) | 849 | WP_286011666.1 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| JGE02_RS05260 (JGE02_05250) | - | 1074711..1075667 (+) | 957 | WP_005711352.1 | DnaD domain-containing protein | - |
| JGE02_RS05265 (JGE02_05255) | ssb | 1075680..1076165 (+) | 486 | WP_005711354.1 | single-stranded DNA-binding protein | Machinery gene |
| JGE02_RS05270 (JGE02_05260) | - | 1076473..1076688 (+) | 216 | WP_005711356.1 | helix-turn-helix domain-containing protein | - |
| JGE02_RS05275 (JGE02_05265) | - | 1076685..1077134 (+) | 450 | WP_005711359.1 | hypothetical protein | - |
| JGE02_RS05280 (JGE02_05270) | - | 1077181..1077435 (+) | 255 | WP_005711361.1 | hypothetical protein | - |
| JGE02_RS05285 (JGE02_05275) | - | 1077432..1077797 (+) | 366 | WP_005714739.1 | hypothetical protein | - |
| JGE02_RS05290 (JGE02_05280) | - | 1077810..1078274 (+) | 465 | WP_005711364.1 | hypothetical protein | - |
| JGE02_RS13825 | - | 1078286..1078537 (+) | 252 | WP_005711366.1 | hypothetical protein | - |
| JGE02_RS05295 (JGE02_05285) | - | 1078657..1079163 (+) | 507 | WP_005711368.1 | DUF1642 domain-containing protein | - |
| JGE02_RS05300 (JGE02_05290) | - | 1079153..1079503 (+) | 351 | WP_005711370.1 | hypothetical protein | - |
| JGE02_RS13920 | - | 1079500..1079708 (+) | 209 | Protein_1018 | hypothetical protein | - |
| JGE02_RS05305 (JGE02_05295) | - | 1079836..1080057 (+) | 222 | WP_005711376.1 | helix-turn-helix domain-containing protein | - |
| JGE02_RS05310 (JGE02_05300) | - | 1080266..1080694 (+) | 429 | WP_005711378.1 | hypothetical protein | - |
| JGE02_RS05315 (JGE02_05305) | - | 1081027..1081887 (+) | 861 | WP_005711380.1 | hypothetical protein | - |
| JGE02_RS05320 (JGE02_05310) | - | 1082428..1083576 (+) | 1149 | WP_005711382.1 | GcrA family cell cycle regulator | - |
| JGE02_RS05325 (JGE02_05315) | - | 1083569..1083892 (+) | 324 | WP_005711383.1 | hypothetical protein | - |
| JGE02_RS05330 (JGE02_05320) | - | 1083929..1084462 (+) | 534 | WP_005711385.1 | terminase small subunit | - |
| JGE02_RS05335 (JGE02_05325) | - | 1084440..1085795 (+) | 1356 | WP_005714737.1 | PBSX family phage terminase large subunit | - |
| JGE02_RS05340 (JGE02_05330) | - | 1085800..1087188 (+) | 1389 | WP_005711389.1 | phage portal protein | - |
| JGE02_RS05345 (JGE02_05335) | - | 1087311..1088933 (+) | 1623 | WP_238397388.1 | minor capsid protein | - |
| JGE02_RS05350 (JGE02_05340) | - | 1089082..1089738 (+) | 657 | WP_005711393.1 | DUF4355 domain-containing protein | - |
| JGE02_RS05355 (JGE02_05345) | - | 1089754..1090767 (+) | 1014 | WP_005711395.1 | hypothetical protein | - |
| JGE02_RS05360 (JGE02_05350) | - | 1090995..1091369 (+) | 375 | WP_005711397.1 | phage head-tail connector protein | - |
| JGE02_RS05365 (JGE02_05355) | - | 1091374..1091676 (+) | 303 | WP_005711399.1 | hypothetical protein | - |
| JGE02_RS05370 (JGE02_05360) | - | 1091673..1092038 (+) | 366 | WP_005711401.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| JGE02_RS05375 (JGE02_05365) | - | 1092039..1092443 (+) | 405 | WP_003582636.1 | DUF3168 domain-containing protein | - |
| JGE02_RS05380 (JGE02_05370) | - | 1092455..1093060 (+) | 606 | WP_005711403.1 | phage tail tube protein | - |
| JGE02_RS05385 (JGE02_05375) | - | 1093147..1093479 (+) | 333 | WP_005711405.1 | tail assembly chaperone | - |
| JGE02_RS05390 (JGE02_05380) | - | 1093584..1093937 (+) | 354 | WP_005711407.1 | hypothetical protein | - |
| JGE02_RS05395 (JGE02_05385) | - | 1093930..1097019 (+) | 3090 | WP_005711409.1 | tape measure protein | - |
| JGE02_RS05400 (JGE02_05390) | - | 1097020..1099008 (+) | 1989 | WP_005714730.1 | distal tail protein Dit | - |
| JGE02_RS05405 (JGE02_05395) | - | 1099009..1101444 (+) | 2436 | WP_020751906.1 | phage tail protein | - |
| JGE02_RS05410 (JGE02_05400) | - | 1101446..1101736 (+) | 291 | WP_005713395.1 | hypothetical protein | - |
| JGE02_RS13830 | - | 1101729..1101860 (+) | 132 | WP_005714777.1 | XkdX family protein | - |
| JGE02_RS05415 (JGE02_05405) | - | 1101890..1102180 (+) | 291 | WP_005714776.1 | hypothetical protein | - |
| JGE02_RS05420 (JGE02_05410) | - | 1102173..1102619 (+) | 447 | WP_005714775.1 | phage holin | - |
| JGE02_RS05425 (JGE02_05415) | - | 1102630..1103814 (+) | 1185 | WP_005713391.1 | GH25 family lysozyme | - |
| JGE02_RS13935 | - | 1104012..1104086 (+) | 75 | Protein_1045 | glucose-6-phosphate isomerase | - |
| JGE02_RS05430 (JGE02_05420) | - | 1104434..1104721 (-) | 288 | WP_005713389.1 | putative quinol monooxygenase | - |
| JGE02_RS05435 (JGE02_05425) | - | 1105016..1105867 (-) | 852 | WP_005713388.1 | DNA/RNA non-specific endonuclease | - |
Sequence
Protein
Download Length: 161 a.a. Molecular weight: 17645.39 Da Isoelectric Point: 7.9701
>NTDB_id=524580 JGE02_RS05265 WP_005711354.1 1075680..1076165(+) (ssb) [Lacticaseibacillus rhamnosus strain B6]
MLNSVSLTGRLTRDVDLRYTQSGTAAGSFTLAVDRKFKSKNGERETDFVNCQIWRKSAENFANFTKKGSLVGVEGRIQTR
TYDNAQGQKIFVTEVIVDNFALLESRQTSQNSPKSQQTVNASAAATTNASQTTPNASRANTTDPFANNGQPIDIQDDDLP
F
MLNSVSLTGRLTRDVDLRYTQSGTAAGSFTLAVDRKFKSKNGERETDFVNCQIWRKSAENFANFTKKGSLVGVEGRIQTR
TYDNAQGQKIFVTEVIVDNFALLESRQTSQNSPKSQQTVNASAAATTNASQTTPNASRANTTDPFANNGQPIDIQDDDLP
F
Nucleotide
Download Length: 486 bp
>NTDB_id=524580 JGE02_RS05265 WP_005711354.1 1075680..1076165(+) (ssb) [Lacticaseibacillus rhamnosus strain B6]
TTGCTAAACAGTGTCTCACTAACAGGCCGGCTGACAAGAGATGTTGACTTGCGTTACACGCAAAGTGGCACGGCGGCAGG
ATCATTCACGCTGGCCGTTGACCGCAAATTCAAGAGCAAAAACGGAGAACGAGAAACTGATTTCGTAAATTGCCAGATTT
GGCGCAAGTCGGCTGAGAACTTTGCAAACTTCACCAAAAAAGGATCCTTGGTTGGTGTGGAAGGCCGTATTCAAACGCGT
ACGTACGATAACGCGCAAGGGCAGAAAATATTCGTGACCGAGGTAATCGTTGATAATTTTGCTTTGCTTGAGTCACGACA
GACGTCTCAGAACAGTCCTAAATCACAGCAAACAGTCAATGCATCAGCAGCAGCGACCACAAACGCGAGTCAAACGACTC
CAAATGCTTCACGAGCGAATACCACGGATCCGTTTGCTAATAATGGCCAGCCGATAGACATCCAAGATGATGATTTGCCA
TTTTAA
TTGCTAAACAGTGTCTCACTAACAGGCCGGCTGACAAGAGATGTTGACTTGCGTTACACGCAAAGTGGCACGGCGGCAGG
ATCATTCACGCTGGCCGTTGACCGCAAATTCAAGAGCAAAAACGGAGAACGAGAAACTGATTTCGTAAATTGCCAGATTT
GGCGCAAGTCGGCTGAGAACTTTGCAAACTTCACCAAAAAAGGATCCTTGGTTGGTGTGGAAGGCCGTATTCAAACGCGT
ACGTACGATAACGCGCAAGGGCAGAAAATATTCGTGACCGAGGTAATCGTTGATAATTTTGCTTTGCTTGAGTCACGACA
GACGTCTCAGAACAGTCCTAAATCACAGCAAACAGTCAATGCATCAGCAGCAGCGACCACAAACGCGAGTCAAACGACTC
CAAATGCTTCACGAGCGAATACCACGGATCCGTTTGCTAATAATGGCCAGCCGATAGACATCCAAGATGATGATTTGCCA
TTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
62.791 |
100 |
0.671 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
49.419 |
100 |
0.528 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
54.717 |
65.839 |
0.36 |
| ssb | Neisseria meningitidis MC58 |
33.526 |
100 |
0.36 |