Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JHZ65_RS02840 Genome accession   NZ_CP067024
Coordinates   587968..588537 (+) Length   189 a.a.
NCBI ID   WP_003426596.1    Uniprot ID   A0A0K8M6E3
Organism   Pseudomonas syringae pv. maculicola strain MAFF 302723     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 582968..593537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHZ65_RS02825 (JHZ65_02830) bfr 583042..583506 (+) 465 WP_005614296.1 bacterioferritin -
  JHZ65_RS02830 (JHZ65_02835) uvrA 583600..586434 (-) 2835 WP_005614297.1 excinuclease ABC subunit UvrA -
  JHZ65_RS02835 (JHZ65_02840) - 586564..587958 (+) 1395 WP_005768949.1 MFS transporter -
  JHZ65_RS02840 (JHZ65_02845) ssb 587968..588537 (+) 570 WP_003426596.1 single-stranded DNA-binding protein Machinery gene
  JHZ65_RS02845 (JHZ65_02850) - 588753..589052 (-) 300 WP_010205374.1 hypothetical protein -
  JHZ65_RS28955 (JHZ65_02855) - 589327..589994 (+) 668 Protein_566 hypothetical protein -
  JHZ65_RS02855 (JHZ65_02860) - 590113..590856 (-) 744 WP_122388746.1 inositol monophosphatase family protein -
  JHZ65_RS02860 (JHZ65_02865) - 590853..591614 (-) 762 WP_057417497.1 glycerophosphoryl diester phosphodiesterase -
  JHZ65_RS02865 (JHZ65_02870) - 591621..592727 (-) 1107 WP_044391396.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20974.10 Da        Isoelectric Point: 5.9404

>NTDB_id=524524 JHZ65_RS02840 WP_003426596.1 587968..588537(+) (ssb) [Pseudomonas syringae pv. maculicola strain MAFF 302723]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPP
QQRDSRPAPQQQAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=524524 JHZ65_RS02840 WP_003426596.1 587968..588537(+) (ssb) [Pseudomonas syringae pv. maculicola strain MAFF 302723]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAATGGACTGACAAGCAGAGCGGCCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAATGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAACAAGGTCAGGGCGGTGGCGGCAACTACAACCAGTCCGCGC
CTCGTCCACAGCAGTCGCGCCCACAGCAATCCGCGCCGCAGCAATCTGCCCCTCAGCAGAACTACAACCAGCAACCGCCA
CAACAGCGCGATTCGCGCCCGGCGCCGCAACAACAAGCGCCGCAGCCTGCTGCTGACTTTGACAGCTTTGATGACGATAT
TCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K8M6E3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.208

100

0.561
  ssb Glaesserella parasuis strain SC1401

47.368

100

0.476
  ssb Neisseria meningitidis MC58

44.681

99.471

0.444
  ssb Neisseria gonorrhoeae MS11

44.681

99.471

0.444