Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   JGS08_RS03905 Genome accession   NZ_CP067022
Coordinates   861525..862865 (-) Length   446 a.a.
NCBI ID   WP_007253450.1    Uniprot ID   -
Organism   Pseudomonas cannabina pv. alisalensis strain MAFF 301419     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 856525..867865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGS08_RS03895 (JGS08_03895) - 859531..860646 (-) 1116 WP_007253452.1 efflux RND transporter periplasmic adaptor subunit -
  JGS08_RS03900 (JGS08_03900) - 860728..861345 (-) 618 WP_007253451.1 TetR/AcrR family transcriptional regulator -
  JGS08_RS03905 (JGS08_03905) pilR 861525..862865 (-) 1341 WP_007253450.1 sigma-54 dependent transcriptional regulator Regulator
  JGS08_RS03910 (JGS08_03910) pilS 862868..864460 (-) 1593 WP_007253449.1 PAS domain-containing sensor histidine kinase Regulator
  JGS08_RS03915 (JGS08_03915) - 864450..864689 (-) 240 WP_054998717.1 PP0621 family protein -
  JGS08_RS03920 (JGS08_03920) - 864819..865841 (-) 1023 WP_007253447.1 outer membrane protein assembly factor BamD -
  JGS08_RS03925 (JGS08_03925) rluD 865991..866953 (+) 963 WP_005895286.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JGS08_RS03930 (JGS08_03930) pgeF 866950..867678 (+) 729 WP_007253446.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50127.19 Da        Isoelectric Point: 6.5081

>NTDB_id=524499 JGS08_RS03905 WP_007253450.1 861525..862865(-) (pilR) [Pseudomonas cannabina pv. alisalensis strain MAFF 301419]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHEWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPQVPVA
MITAHGNLDTAIHALKAGAFDFVTKPVDLNRLRELVNSALSLPSSVQPVRSIDSRLLGDSPPMRTLRTQIGKLARSQAPI
YISGESGSGKELVARLIHEQGPRSEKPFVPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHNGTLFLDEVADL
PLAMQVKLLRAIQEKSIRSIGGQQEQVVDVRILCATHKDLSAEVVAGRFRQDLYYRLNVIELRVPSLRERREDIDQLAAS
VLQRLAGKDAQPVARLHAQALETLKNYRFPGNVRELENMLERAYTLCENDEIHASDLRLAECSSPQEHHGANLADIDNLE
DYLESIERKLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=524499 JGS08_RS03905 WP_007253450.1 861525..862865(-) (pilR) [Pseudomonas cannabina pv. alisalensis strain MAFF 301419]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGACGATGAGCCGGATATTCGTGAACTCCTGGAAATCACCCTGGGGCGCAT
GAAGCTCGACACTCGCAGCGCCCGCAATGTCGCCGAGGCGCATGAATGGCTGGCGCGCGAGCCGTTCGACATGTGCCTGA
CCGACATGCGCCTGCCTGACGGCAACGGCCTTGAACTGGTGCAGCATATCCAGCACGGTTATCCGCAAGTGCCGGTGGCA
ATGATCACCGCGCATGGCAACCTGGACACCGCGATTCATGCGCTAAAAGCCGGGGCGTTCGATTTCGTGACCAAGCCGGT
TGACCTCAACCGCCTGCGCGAGCTGGTCAACAGCGCGCTGAGCCTGCCCTCCAGCGTGCAACCGGTGCGCAGCATCGACA
GCCGCCTGCTCGGCGATTCGCCGCCGATGCGCACGTTGCGTACCCAGATCGGCAAGCTGGCGCGCAGTCAGGCGCCGATC
TACATCAGCGGTGAATCCGGCAGCGGCAAAGAACTGGTGGCGCGCTTGATCCACGAGCAGGGGCCGCGGAGTGAAAAGCC
GTTCGTGCCAGTCAATTGCGGGGCGATTCCTTCCGAATTGATGGAAAGCGAGTTCTTCGGCCACCGCAAAGGCAGCTTCA
GCGGCGCCCATGAAGACAAGCCGGGCCTGTTTCAGGCGGCGCATAACGGCACGTTGTTTCTTGATGAGGTCGCCGATCTG
CCGCTGGCCATGCAGGTAAAACTGCTGCGGGCGATTCAGGAAAAATCTATTCGCAGCATCGGCGGTCAGCAGGAACAGGT
GGTCGACGTGCGCATTCTCTGCGCCACCCATAAGGACCTCAGCGCCGAAGTGGTCGCCGGGCGTTTCCGTCAGGATTTGT
ATTACCGGTTGAACGTGATCGAACTGCGCGTCCCCTCATTGCGCGAGCGCCGTGAGGATATCGACCAACTGGCCGCCAGC
GTTCTGCAGCGTCTGGCGGGCAAGGATGCGCAACCGGTTGCGCGTTTGCATGCACAGGCACTGGAAACCCTGAAAAACTA
TCGCTTCCCCGGCAACGTGCGCGAACTGGAAAACATGCTGGAACGCGCTTACACCCTCTGCGAAAACGACGAAATCCACG
CCAGCGACCTGCGTCTGGCCGAATGCTCCAGCCCGCAGGAACACCACGGCGCAAACCTGGCCGATATCGACAATCTGGAA
GATTACCTGGAAAGCATCGAGCGCAAACTGATCCTGCAAGCCCTCGAAGAAACCCGCTGGAACCGCACCGCCGCCGCAGA
ACGGCTCAGCTTGTCGTTCCGCTCGTTGCGTTACCGGTTGAAAAAGCTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Sigma-54 interaction domain (Sigma54_activat)

(137-302)

Response regulator receiver domain (Response_reg)

(7-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.781

99.327

0.783
  pilR Acinetobacter baumannii strain A118

48.922

100

0.509
  luxO Vibrio cholerae strain A1552

37.303

99.776

0.372