Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   JGS08_RS03910 Genome accession   NZ_CP067022
Coordinates   862868..864460 (-) Length   530 a.a.
NCBI ID   WP_007253449.1    Uniprot ID   -
Organism   Pseudomonas cannabina pv. alisalensis strain MAFF 301419     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 857868..869460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGS08_RS03895 (JGS08_03895) - 859531..860646 (-) 1116 WP_007253452.1 efflux RND transporter periplasmic adaptor subunit -
  JGS08_RS03900 (JGS08_03900) - 860728..861345 (-) 618 WP_007253451.1 TetR/AcrR family transcriptional regulator -
  JGS08_RS03905 (JGS08_03905) pilR 861525..862865 (-) 1341 WP_007253450.1 sigma-54 dependent transcriptional regulator Regulator
  JGS08_RS03910 (JGS08_03910) pilS 862868..864460 (-) 1593 WP_007253449.1 PAS domain-containing sensor histidine kinase Regulator
  JGS08_RS03915 (JGS08_03915) - 864450..864689 (-) 240 WP_054998717.1 PP0621 family protein -
  JGS08_RS03920 (JGS08_03920) - 864819..865841 (-) 1023 WP_007253447.1 outer membrane protein assembly factor BamD -
  JGS08_RS03925 (JGS08_03925) rluD 865991..866953 (+) 963 WP_005895286.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JGS08_RS03930 (JGS08_03930) pgeF 866950..867678 (+) 729 WP_007253446.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58311.31 Da        Isoelectric Point: 6.9382

>NTDB_id=524500 JGS08_RS03910 WP_007253449.1 862868..864460(-) (pilS) [Pseudomonas cannabina pv. alisalensis strain MAFF 301419]
MTAETPHLASPQAQRILRLYHLYRLTIGVVLVLLISSSLETELLQLANPNLFRSGCWLYLVFNILVVVLLERPTRQSHLF
SLAMVDAIMLSGLFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARMQTSEVLAEQRAADVDSLEELNALILQRMRTGILVLDARRQVLLANQGALALLGHERLVGQVID
AYSPQLVDRLRQWLINPIMQPRSISTSAIGPELQPSFVALNRGDQRQTLIFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESETLSAPDRRLGQIIHDQSQRIDRVIENVLQLSRRREAQPDLLDLKVWLDAFVADFRDTALPN
QLLHVEIHAGTLTTRMDAEQLTQVVTNLVQNGLRYSNQNHSLAQVWLKLHHDRKSDLPILEVLDDGPGVSEQHLSKIFEP
LFTTESKGTGLGLYLSRELCESNQAHLEYAPRPGGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=524500 JGS08_RS03910 WP_007253449.1 862868..864460(-) (pilS) [Pseudomonas cannabina pv. alisalensis strain MAFF 301419]
GTGACCGCTGAGACGCCCCACCTTGCCAGCCCACAGGCGCAACGAATTCTGCGGCTGTATCACCTTTATCGCCTGACCAT
CGGCGTCGTCCTGGTCCTGTTGATCTCCAGTAGCCTGGAAACCGAACTGTTGCAGCTGGCCAACCCGAACCTGTTCCGCT
CGGGTTGCTGGCTGTACCTGGTGTTCAACATTCTGGTCGTGGTGTTGCTCGAGCGCCCTACCCGTCAGTCACACCTGTTC
AGCCTGGCGATGGTCGACGCGATCATGCTGTCCGGCCTGTTCTATGCGGCAGGCGGCCCGTCCAGCGGCATCGGCAACCT
GCTGATCGCCTCGGTCGCCATCAGTAACGTACTGCTACGCGGCCGTATCGGCTTGTTGATCGCCGCCGTATCTGCCATCG
GCATCATTTACCTGACGTTCTACATCAGCTTCGGCACGCCTTCAGTCTCCAACGACTACGTGCAGGCAGGTTCGCTGGGG
GCGCTGTGCTTCGCCGCTGCGTTGCTGGTGCAGGCGTTGACCGCGCGCATGCAGACCAGCGAAGTGCTTGCCGAACAGCG
TGCAGCGGACGTCGACAGCCTGGAAGAACTCAACGCGCTGATTCTGCAACGCATGCGCACCGGCATTCTGGTACTGGACG
CTCGACGTCAGGTGCTGCTGGCCAATCAGGGCGCGCTGGCTTTGCTGGGCCACGAACGGCTGGTCGGTCAAGTGATAGAC
GCTTACTCGCCGCAGTTGGTTGATCGCCTGCGCCAATGGCTGATCAATCCGATCATGCAGCCGCGCAGCATCAGCACGTC
GGCCATCGGCCCAGAGTTGCAACCGAGTTTCGTCGCACTCAATCGGGGCGATCAGCGCCAAACGCTGATTTTTCTCGAAG
ATCTGTCGCAAATCGCCCATCAGGCGCAACAGCTCAAGCTCGCCGCGCTGGGCCGTCTGACCGCAGGCATCGCCCACGAA
ATACGCAACCCGCTGGGTGCCGTGAGCCACGCTGCGCAGTTGCTCAACGAATCGGAAACACTCAGCGCGCCGGATCGGCG
TCTGGGGCAGATCATTCACGATCAGTCGCAGCGCATTGACCGAGTGATTGAAAACGTCTTGCAGCTCTCTCGGCGACGTG
AGGCGCAACCCGATCTGCTGGACCTGAAAGTCTGGCTGGACGCATTTGTCGCCGACTTTCGCGATACCGCCCTGCCCAAC
CAGTTGCTGCACGTGGAGATCCATGCCGGCACACTCACCACGCGCATGGACGCCGAACAGTTGACACAAGTGGTGACCAA
TCTGGTGCAGAACGGCCTGCGCTACAGCAACCAGAATCACTCCTTGGCGCAGGTCTGGCTGAAACTCCATCATGACCGGA
AAAGCGACCTGCCCATTCTCGAAGTGCTGGACGACGGGCCAGGCGTCAGCGAACAGCACCTGAGCAAGATTTTCGAACCC
TTGTTCACGACTGAAAGCAAAGGCACCGGCCTGGGGCTATACCTTTCCCGTGAGTTGTGCGAAAGCAATCAGGCGCATCT
GGAATATGCACCCCGGCCAGGCGGCGGCAGTTGTTTGCGCATTACCTTCGCCCACCCGTTCAAAACGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.959

100

0.621