Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JGS08_RS02600 Genome accession   NZ_CP067022
Coordinates   546146..546715 (+) Length   189 a.a.
NCBI ID   WP_024646123.1    Uniprot ID   W0MR56
Organism   Pseudomonas cannabina pv. alisalensis strain MAFF 301419     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 531935..545703 546146..546715 flank 443


Gene organization within MGE regions


Location: 531935..546715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGS08_RS02525 (JGS08_02525) - 533070..533345 (+) 276 WP_054080130.1 BPSL0761 family protein -
  JGS08_RS02530 (JGS08_02530) - 533342..534103 (+) 762 WP_007253300.1 NAD-dependent protein deacylase -
  JGS08_RS02535 (JGS08_02535) - 534529..535284 (+) 756 WP_005759762.1 type II secretion system protein GspK -
  JGS08_RS02540 (JGS08_02540) - 535386..537083 (+) 1698 WP_005759759.1 GspE/PulE family protein -
  JGS08_RS02545 (JGS08_02545) - 537080..538285 (+) 1206 WP_005759757.1 type II secretion system F family protein -
  JGS08_RS02550 (JGS08_02550) - 538285..538605 (+) 321 WP_054080128.1 type II secretion system protein GspG -
  JGS08_RS02555 (JGS08_02555) - 538608..539045 (+) 438 WP_007253296.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  JGS08_RS02560 (JGS08_02560) - 539042..539419 (+) 378 WP_005759752.1 type II secretion system protein -
  JGS08_RS02565 (JGS08_02565) - 539419..540018 (+) 600 WP_005759750.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  JGS08_RS02570 (JGS08_02570) - 540246..540491 (+) 246 WP_159372439.1 hypothetical protein -
  JGS08_RS02575 (JGS08_02575) - 540551..541492 (+) 942 WP_159372438.1 IS5 family transposase -
  JGS08_RS02580 (JGS08_02580) tnpC 541512..543044 (-) 1533 WP_159372363.1 IS66 family transposase -
  JGS08_RS02585 (JGS08_02585) tnpB 543061..543420 (-) 360 WP_007247726.1 IS66 family insertion sequence element accessory protein TnpB -
  JGS08_RS02590 (JGS08_02590) - 543705..545033 (-) 1329 WP_155490310.1 hypothetical protein -
  JGS08_RS02595 (JGS08_02595) - 545026..545841 (-) 816 WP_005753243.1 TnsA endonuclease N-terminal domain-containing protein -
  JGS08_RS02600 (JGS08_02600) ssb 546146..546715 (+) 570 WP_024646123.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20988.13 Da        Isoelectric Point: 5.9404

>NTDB_id=524497 JGS08_RS02600 WP_024646123.1 546146..546715(+) (ssb) [Pseudomonas cannabina pv. alisalensis strain MAFF 301419]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPP
QQRDSRPAPQQQAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=524497 JGS08_RS02600 WP_024646123.1 546146..546715(+) (ssb) [Pseudomonas cannabina pv. alisalensis strain MAFF 301419]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAATGGACTGACAAGCAGACCGGTCAGAAAGTCGAAAAGACCGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAACAAGGTCAGGGCGGTGGCGGCAACTACAACCAGTCCGCAC
CTCGTCCACAGCAGTCGCGCCCTCAGCAATCGGCGCCGCAGCAGTCCGCACCTCAGCAAAATTACAACCAGCAGCCGCCA
CAACAGCGCGACTCCCGCCCAGCGCCGCAACAACAAGCGCCACAGCCTGCTGCTGATTTTGATAGCTTTGATGATGATAT
TCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W0MR56

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.729

100

0.566
  ssb Glaesserella parasuis strain SC1401

47.895

100

0.481
  ssb Neisseria meningitidis MC58

44.681

99.471

0.444
  ssb Neisseria gonorrhoeae MS11

44.681

99.471

0.444