Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JFY49_RS15240 Genome accession   NZ_CP067019
Coordinates   3089543..3090139 (-) Length   198 a.a.
NCBI ID   WP_166170763.1    Uniprot ID   -
Organism   Acinetobacter sp. CS-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3084543..3095139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFY49_RS15220 (JFY49_15220) - 3085058..3085891 (-) 834 WP_166170756.1 SAM-dependent methyltransferase -
  JFY49_RS15225 (JFY49_15225) - 3085895..3087193 (-) 1299 WP_166170758.1 FAD-dependent oxidoreductase -
  JFY49_RS15230 (JFY49_15230) - 3087620..3088495 (-) 876 WP_166170759.1 pirin family protein -
  JFY49_RS15235 (JFY49_15235) ahpC 3088764..3089327 (-) 564 WP_166170761.1 alkyl hydroperoxide reductase subunit C -
  JFY49_RS15240 (JFY49_15240) ssb 3089543..3090139 (-) 597 WP_166170763.1 single-stranded DNA-binding protein Machinery gene
  JFY49_RS15245 (JFY49_15245) - 3090191..3091555 (-) 1365 WP_166170765.1 MFS transporter -
  JFY49_RS15250 (JFY49_15250) - 3091703..3092788 (-) 1086 WP_200224892.1 DUF475 domain-containing protein -
  JFY49_RS15255 (JFY49_15255) tenA 3093029..3093700 (+) 672 WP_166170769.1 thiaminase II -
  JFY49_RS15260 (JFY49_15260) - 3093952..3094291 (-) 340 Protein_2966 GlpM family protein -
  JFY49_RS15265 (JFY49_15265) - 3094356..3094709 (-) 354 WP_166170792.1 DUF1304 domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21930.53 Da        Isoelectric Point: 6.4817

>NTDB_id=524490 JFY49_RS15240 WP_166170763.1 3089543..3090139(-) (ssb) [Acinetobacter sp. CS-2]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSDSWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQSGQERYTTEIRGEQMQMLDSNRQQGEQAASGDNSGYNQPRFNNNQGGYNNNNNNNNNQGGYGNQGGYNNN
QNNQGNSYGNNNPGGFAPKQQPVPAAAAPADLDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=524490 JFY49_RS15240 WP_166170763.1 3089543..3090139(-) (ssb) [Acinetobacter sp. CS-2]
ATGCGTGGTGTTAATAAAGTTATTTTAGTTGGAACTTTAGGTAAAGATCCTGAAACCAAAACTTTTCCAAATGGTGGGTC
TCTGACTCAGTTCTCGATTGCAACCAGCGATTCGTGGACTGATAAAAATACCGGTGAGCGTAAAGAGCAAACCGAATGGC
ATCGTATTGTGTTGCATAACCGCTTAGGTGAAATTGCACAGCAATATCTACGTAAGGGTTCAAAAGTTTATATTGAAGGT
TCACTGCGTACGCGTCAGTGGACAGACCAAAGTGGTCAGGAACGCTACACCACAGAAATTCGTGGTGAACAGATGCAAAT
GCTGGACAGTAACCGTCAGCAAGGTGAACAAGCTGCGAGTGGCGATAACTCGGGTTATAACCAGCCACGTTTCAACAATA
ATCAAGGCGGCTATAACAACAATAATAACAATAATAACAACCAAGGCGGTTATGGCAATCAGGGTGGTTATAACAACAAC
CAGAACAATCAGGGCAATAGTTATGGCAATAACAACCCGGGTGGTTTTGCACCAAAACAACAGCCTGTACCAGCAGCAGC
TGCACCGGCAGATTTAGATGATGATTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.244

100

0.52
  ssb Vibrio cholerae strain A1552

44.828

100

0.46
  ssb Neisseria meningitidis MC58

39.5

100

0.399
  ssb Neisseria gonorrhoeae MS11

37.949

98.485

0.374