Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I6I26_RS11785 Genome accession   NZ_CP067014
Coordinates   2407580..2408095 (-) Length   171 a.a.
NCBI ID   WP_017637494.1    Uniprot ID   -
Organism   Staphylococcus pasteuri strain FDAARGOS_1069     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2402580..2413095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I26_RS11750 (I6I26_11750) - 2402604..2402858 (-) 255 WP_017637491.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  I6I26_RS11755 (I6I26_11755) - 2403418..2403933 (-) 516 WP_126567755.1 VOC family protein -
  I6I26_RS11760 (I6I26_11760) - 2404448..2404876 (-) 429 WP_159463784.1 protein-export chaperone SecB -
  I6I26_RS11765 (I6I26_11765) - 2404891..2405184 (-) 294 WP_126567759.1 hypothetical protein -
  I6I26_RS11770 (I6I26_11770) - 2405186..2405752 (-) 567 WP_126567762.1 hypothetical protein -
  I6I26_RS11775 (I6I26_11775) - 2405878..2406669 (-) 792 WP_126567765.1 hypothetical protein -
  I6I26_RS11780 (I6I26_11780) rpsR 2407294..2407536 (-) 243 WP_002451519.1 30S ribosomal protein S18 -
  I6I26_RS11785 (I6I26_11785) ssbA 2407580..2408095 (-) 516 WP_017637494.1 single-stranded DNA-binding protein Machinery gene
  I6I26_RS11790 (I6I26_11790) rpsF 2408117..2408413 (-) 297 WP_017637495.1 30S ribosomal protein S6 -
  I6I26_RS11795 (I6I26_11795) - 2408792..2409613 (+) 822 WP_046467356.1 GH25 family lysozyme -
  I6I26_RS11800 (I6I26_11800) - 2409678..2409869 (+) 192 WP_017637497.1 hypothetical protein -
  I6I26_RS11805 (I6I26_11805) ychF 2410001..2411098 (-) 1098 WP_017637498.1 redox-regulated ATPase YchF -
  I6I26_RS11810 (I6I26_11810) - 2411110..2411313 (-) 204 WP_017637499.1 DUF951 domain-containing protein -
  I6I26_RS11815 (I6I26_11815) - 2411334..2412212 (-) 879 WP_046467355.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18846.38 Da        Isoelectric Point: 4.7410

>NTDB_id=524430 I6I26_RS11785 WP_017637494.1 2407580..2408095(-) (ssbA) [Staphylococcus pasteuri strain FDAARGOS_1069]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQNGGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNSSKSNSNQSDNPFANANG
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=524430 I6I26_RS11785 WP_017637494.1 2407580..2408095(-) (ssbA) [Staphylococcus pasteuri strain FDAARGOS_1069]
ATGATAAATAGAGTTGTATTAGTAGGTCGTTTGACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTTGTTT
TTAGAAGACAAGCAGAAAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTAACTGAAGTCGTTTGTGACAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAAAACGGCGGTGGCCAACGTTCACAAAACAACGAATTCCAAGACTACGGTCAAGGATTCGGTGGTCAACAATCAG
GACAAAATACTTCGTATAACAACAATTCATCTAAATCTAATTCAAATCAATCAGATAACCCATTTGCAAATGCAAACGGA
CCTATTGATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.894

100

0.637
  ssb Latilactobacillus sakei subsp. sakei 23K

53.179

100

0.538
  ssb Glaesserella parasuis strain SC1401

34.392

100

0.38
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

65.497

0.374