Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BTG_RS20660 Genome accession   NC_018500
Coordinates   4142423..4142944 (+) Length   173 a.a.
NCBI ID   WP_000981963.1    Uniprot ID   -
Organism   Bacillus thuringiensis HD-771     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4137423..4147944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTG_RS20630 (BTG_20925) spo0J 4137868..4138719 (+) 852 WP_001051833.1 stage 0 sporulation protein Spo0J -
  BTG_RS20635 (BTG_20930) yyaC 4138740..4139336 (-) 597 WP_001020710.1 spore protease YyaC -
  BTG_RS20640 (BTG_20935) - 4139596..4140477 (+) 882 WP_000365111.1 mechanosensitive ion channel family protein -
  BTG_RS20645 (BTG_20940) - 4140540..4140698 (+) 159 WP_153577919.1 DUF951 domain-containing protein -
  BTG_RS20650 (BTG_20945) ychF 4140814..4141914 (+) 1101 WP_000524658.1 redox-regulated ATPase YchF -
  BTG_RS20655 (BTG_20950) rpsF 4142106..4142396 (+) 291 WP_001233781.1 30S ribosomal protein S6 -
  BTG_RS20660 (BTG_20955) ssbA 4142423..4142944 (+) 522 WP_000981963.1 single-stranded DNA-binding protein Machinery gene
  BTG_RS20665 (BTG_20960) rpsR 4142990..4143223 (+) 234 WP_000918873.1 30S ribosomal protein S18 -
  BTG_RS20670 (BTG_20965) - 4143303..4144238 (+) 936 WP_000814841.1 YybS family protein -
  BTG_RS20675 (BTG_20970) - 4144317..4146290 (+) 1974 WP_001113785.1 DHH family phosphoesterase -
  BTG_RS20680 (BTG_20975) rplI 4146287..4146733 (+) 447 WP_000864237.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18809.58 Da        Isoelectric Point: 4.9222

>NTDB_id=52441 BTG_RS20660 WP_000981963.1 4142423..4142944(+) (ssbA) [Bacillus thuringiensis HD-771]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=52441 BTG_RS20660 WP_000981963.1 4142423..4142944(+) (ssbA) [Bacillus thuringiensis HD-771]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGAAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGATGGACAAGACGGTAAACGTGTGTATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAATCAAGGGAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.751

100

0.734
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

36.264

100

0.382

Multiple sequence alignment