Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JH263_RS16960 Genome accession   NZ_CP067002
Coordinates   3825828..3826886 (-) Length   352 a.a.
NCBI ID   WP_016944654.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain 39-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3820828..3831886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH263_RS16940 (JH263_16880) - 3821957..3823837 (-) 1881 WP_274514302.1 type IV pilus secretin PilQ family protein -
  JH263_RS16945 (JH263_16885) - 3823857..3824390 (-) 534 WP_011038332.1 pilus assembly protein PilP -
  JH263_RS16950 (JH263_16890) - 3824387..3825052 (-) 666 WP_116923102.1 type 4a pilus biogenesis protein PilO -
  JH263_RS16955 (JH263_16895) - 3825049..3825828 (-) 780 WP_012437501.1 PilN domain-containing protein -
  JH263_RS16960 (JH263_16900) comM 3825828..3826886 (-) 1059 WP_016944654.1 pilus assembly protein PilM Machinery gene
  JH263_RS16965 (JH263_16905) - 3827102..3829528 (+) 2427 WP_274514303.1 penicillin-binding protein 1A -
  JH263_RS16975 (JH263_16915) - 3830108..3830758 (+) 651 WP_011038337.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37620.24 Da        Isoelectric Point: 4.3924

>NTDB_id=524143 JH263_RS16960 WP_016944654.1 3825828..3826886(-) (comM) [Xanthomonas campestris pv. campestris strain 39-3]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=524143 JH263_RS16960 WP_016944654.1 3825828..3826886(-) (comM) [Xanthomonas campestris pv. campestris strain 39-3]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTTATTGGTGTCGACATCAGTTCCACTGCGGTCAAGCTATTGCAGCTGTC
GCGCAGCGGAAATCGTTTCCGCGTGGAACATTACGCTGTGGAACCGTTGCCGCCGAATGCGGTGGTGGAAAAGAACATCG
TCGAAGTCGAAGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCAGCGGCC
GTGGCTGGCTCGGCGGTGATCACCAAGCTGATCCCCATGCCGGCGGATCTGGACGATAGCGATCTGGAAGCCCAGGTCGA
GCTGGAAGCCACCAACTACATCCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTCGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCGGCGTCGCGTTCGGAAAACGTCGAGCTGCGCCAATCGGCGCTGGAGCTCGGC
GGCCTGGTCGCAAAGGTGATGGACGTGGAGGCCTTTGCGGTCGAGAACGCCTTCGCCCTGGTTGCCAGCGAATTGCCGGT
CGCCGCCGATGCGGTGGTGGCGCTGGTGGACATCGGCGCGACCATGACCACGCTGAGCGTGCTGCGCTCCGGGCGCAGCC
TCTACAGCCGCGAGCAGGTGTTCGGTGGCAAGCAGCTCACCGACGAAGTGATGCGCCGCTACGGCCTGACCTATGAAGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGCCTGCCGGAGAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAGGAAGCGACGGT
GCAGCAGATCAGCCGCCTGTTGCAGTTCTTCTATGCGGGCAGCGAATTCAATCGCGTCGATTGCATCGTGCTGGCAGGCG
GCTGCGCCGCGTTGTCGCGCCTGCCGGAGATGGTGGAAGAACAGCTGGGCGTGACTACCGTGGTCGCCAACCCGCTGGCA
CAGATGACGCTGGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

50.997

99.716

0.509
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472