Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JH296_RS07260 Genome accession   NZ_CP066986
Coordinates   1720851..1721366 (+) Length   171 a.a.
NCBI ID   WP_040940953.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain 15-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1715851..1726366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH296_RS07245 (JH296_07225) murD 1716968..1718374 (+) 1407 WP_019237461.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  JH296_RS07250 (JH296_07230) - 1718528..1719328 (+) 801 WP_040940951.1 dienelactone hydrolase family protein -
  JH296_RS07255 (JH296_07235) - 1719571..1720569 (-) 999 WP_040940952.1 polyprenyl synthetase family protein -
  JH296_RS07260 (JH296_07240) ssb 1720851..1721366 (+) 516 WP_040940953.1 single-stranded DNA-binding protein Machinery gene
  JH296_RS07265 - 1721561..1721941 (-) 381 WP_227971259.1 hypothetical protein -
  JH296_RS07270 (JH296_07250) - 1721979..1722785 (+) 807 WP_012437816.1 MipA/OmpV family protein -
  JH296_RS07275 (JH296_07255) - 1722844..1723815 (+) 972 WP_012437817.1 aspartyl/asparaginyl beta-hydroxylase domain-containing protein -
  JH296_RS07280 (JH296_07260) - 1723955..1724638 (+) 684 WP_197708554.1 response regulator transcription factor -
  JH296_RS07285 (JH296_07265) - 1724635..1726011 (+) 1377 WP_040940956.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18575.48 Da        Isoelectric Point: 5.3177

>NTDB_id=523912 JH296_RS07260 WP_040940953.1 1720851..1721366(+) (ssb) [Xanthomonas campestris pv. campestris strain 15-1]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRTQAPRQQQGGGGGGGGQDYAPRRQQPAQQQSAPP
MDDFADDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=523912 JH296_RS07260 WP_040940953.1 1720851..1721366(+) (ssb) [Xanthomonas campestris pv. campestris strain 15-1]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGAAGGCAATAACCAGGAACGCACCGAGTGGC
ATCGCGTGGTGTTTTTTGGAAAATTGGGCGAGATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
GAGCTGCGCTACGACAAGTACACCGGCCAGGACGGCGTAGAGAAGTACAGCACCGACATTGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGCGGTGAAGGCGGCGGCGGTGGCATGGGCGGCGATCGCCCGCAGCGCACGCAGGCCCCGCGCCAGCAGC
AGGGTGGCGGCGGTGGTGGTGGCGGTCAGGACTACGCACCGCGCCGTCAGCAGCCGGCCCAGCAGCAGTCGGCGCCGCCG
ATGGACGATTTTGCGGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.032

100

0.509
  ssb Glaesserella parasuis strain SC1401

45.81

100

0.48
  ssb Neisseria meningitidis MC58

45.506

100

0.474
  ssb Neisseria gonorrhoeae MS11

45.506

100

0.474