Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   JH296_RS05625 Genome accession   NZ_CP066986
Coordinates   1330179..1331573 (-) Length   464 a.a.
NCBI ID   WP_165349438.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain 15-1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1325179..1336573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH296_RS05605 (JH296_05595) pilC 1325399..1326655 (-) 1257 WP_129589289.1 type II secretion system F family protein Machinery gene
  JH296_RS05610 (JH296_05600) pilA/pilAI 1327015..1327425 (+) 411 WP_274497102.1 pilin Machinery gene
  JH296_RS05615 (JH296_05605) pilA/pilAI 1327500..1327907 (+) 408 WP_129588891.1 pilin Machinery gene
  JH296_RS05620 (JH296_05610) pilB 1328028..1329761 (+) 1734 WP_274497103.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JH296_RS05625 (JH296_05615) pilR 1330179..1331573 (-) 1395 WP_165349438.1 sigma-54 dependent transcriptional regulator Regulator
  JH296_RS05630 (JH296_05620) - 1331782..1333392 (-) 1611 WP_011038210.1 HAMP domain-containing sensor histidine kinase -
  JH296_RS05635 (JH296_05625) sucC 1333626..1334795 (+) 1170 WP_012437609.1 ADP-forming succinate--CoA ligase subunit beta -
  JH296_RS05640 (JH296_05630) sucD 1334820..1335695 (+) 876 WP_274497105.1 succinate--CoA ligase subunit alpha -
  JH296_RS05645 (JH296_05635) - 1335799..1336209 (+) 411 WP_319608033.1 DNA-binding protein -
  JH296_RS05650 (JH296_05640) - 1336213..1336515 (+) 303 WP_011038207.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50309.73 Da        Isoelectric Point: 6.5131

>NTDB_id=523907 JH296_RS05625 WP_165349438.1 1330179..1331573(-) (pilR) [Xanthomonas campestris pv. campestris strain 15-1]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPLEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALNQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAASPGTAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=523907 JH296_RS05625 WP_165349438.1 1330179..1331573(-) (pilR) [Xanthomonas campestris pv. campestris strain 15-1]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCTC
CGCTGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTTGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCCGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAACCGGGTCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCAGTGCGCCCGGTCGGCGC
CTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACACACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAGCTGCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGCCTGGCCCGCAGCCATGGCCGCCCGATTCCCTTGCTCACCCAGTCCGCACTCGA
TGCCCTGAACCAATACGGCTTCCCCGGCAACGTGCGCGAGCTGGAAAACATCCTGGAACGTGCGCTTGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCATGGCGGCCACCGCCTTGCCGCCAGCCCGGGCACTGCTGCG
GTTGAACCGCGCGAAGCGGTGGTCGACATCGACCCTGCCTCCTCTGCCCTGCCCTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCCCAGCTAGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.261

99.138

0.627
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491