Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JH301_RS07235 Genome accession   NZ_CP066981
Coordinates   1719353..1719883 (+) Length   176 a.a.
NCBI ID   WP_274316831.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain 28-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1714353..1724883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH301_RS07220 (JH301_07195) murD 1715477..1716883 (+) 1407 WP_274498732.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  JH301_RS07225 (JH301_07200) - 1717030..1717830 (+) 801 WP_040940951.1 dienelactone hydrolase family protein -
  JH301_RS07230 (JH301_07205) - 1718073..1719071 (-) 999 WP_040940952.1 polyprenyl synthetase family protein -
  JH301_RS07235 (JH301_07210) ssb 1719353..1719883 (+) 531 WP_274316831.1 single-stranded DNA-binding protein Machinery gene
  JH301_RS07240 - 1720078..1720458 (-) 381 WP_227971259.1 hypothetical protein -
  JH301_RS07245 (JH301_07220) - 1720496..1721302 (+) 807 WP_012437816.1 MipA/OmpV family protein -
  JH301_RS07250 (JH301_07225) - 1721361..1722332 (+) 972 WP_012437817.1 aspartyl/asparaginyl beta-hydroxylase domain-containing protein -
  JH301_RS07255 (JH301_07230) - 1722472..1723155 (+) 684 WP_197708554.1 response regulator transcription factor -
  JH301_RS07260 (JH301_07235) - 1723152..1724528 (+) 1377 WP_040940956.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19031.94 Da        Isoelectric Point: 5.3400

>NTDB_id=523825 JH301_RS07235 WP_274316831.1 1719353..1719883(+) (ssb) [Xanthomonas campestris pv. campestris strain 28-1]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGRGEGGGGGMGGDRPQRTQAPRQQQGGGGGGGGQDYAPRRQQPAQQ
QSAPPMDDFADDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=523825 JH301_RS07235 WP_274316831.1 1719353..1719883(+) (ssb) [Xanthomonas campestris pv. campestris strain 28-1]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGAAGGCAATAACCAGGAACGCACCGAGTGGC
ATCGCGTGGTGTTTTTTGGAAAATTGGGCGAGATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
GAGCTGCGCTACGACAAGTACACCGGCCAGGACGGCGTAGAGAAGTACAGCACCGACATTGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGCGGTGAAGGCGGCCGCGGTGAAGGCGGCGGCGGTGGCATGGGCGGCGATCGCCCGCAGCGCACGCAGG
CCCCGCGCCAGCAGCAGGGTGGCGGCGGTGGTGGTGGCGGTCAGGACTACGCACCGCGCCGTCAGCAGCCGGCCCAGCAG
CAGTCGGCGCCGCCGATGGACGATTTTGCGGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

45.789

100

0.494
  ssb Glaesserella parasuis strain SC1401

46.237

100

0.489
  ssb Neisseria meningitidis MC58

46.067

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.067

100

0.466