Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JH308_RS13435 Genome accession   NZ_CP066979
Coordinates   3020621..3021136 (-) Length   171 a.a.
NCBI ID   WP_040940953.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain 55-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3015621..3026136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH308_RS13410 (JH308_13385) - 3015976..3017352 (-) 1377 WP_040940956.1 HAMP domain-containing sensor histidine kinase -
  JH308_RS13415 (JH308_13390) - 3017349..3018032 (-) 684 WP_197708554.1 response regulator transcription factor -
  JH308_RS13420 (JH308_13395) - 3018172..3019143 (-) 972 WP_012437817.1 aspartyl/asparaginyl beta-hydroxylase domain-containing protein -
  JH308_RS13425 (JH308_13400) - 3019202..3020008 (-) 807 WP_012437816.1 MipA/OmpV family protein -
  JH308_RS13430 - 3020046..3020426 (+) 381 WP_227971259.1 hypothetical protein -
  JH308_RS13435 (JH308_13410) ssb 3020621..3021136 (-) 516 WP_040940953.1 single-stranded DNA-binding protein Machinery gene
  JH308_RS13440 (JH308_13415) - 3021418..3022416 (+) 999 WP_040940952.1 polyprenyl synthetase family protein -
  JH308_RS13445 (JH308_13420) - 3022659..3023459 (-) 801 WP_040940951.1 dienelactone hydrolase family protein -
  JH308_RS13450 (JH308_13425) murD 3023606..3025012 (-) 1407 WP_237343471.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18575.48 Da        Isoelectric Point: 5.3177

>NTDB_id=523789 JH308_RS13435 WP_040940953.1 3020621..3021136(-) (ssb) [Xanthomonas campestris pv. campestris strain 55-2]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRTQAPRQQQGGGGGGGGQDYAPRRQQPAQQQSAPP
MDDFADDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=523789 JH308_RS13435 WP_040940953.1 3020621..3021136(-) (ssb) [Xanthomonas campestris pv. campestris strain 55-2]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGAAGGCAATAACCAGGAACGCACCGAGTGGC
ATCGCGTGGTGTTTTTTGGAAAATTGGGCGAGATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
GAGCTGCGCTACGACAAGTACACCGGCCAGGACGGCGTAGAGAAGTACAGCACCGACATTGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGCGGTGAAGGCGGCGGCGGTGGCATGGGCGGCGATCGCCCGCAGCGCACGCAGGCCCCGCGCCAGCAGC
AGGGTGGCGGCGGTGGTGGTGGCGGTCAGGACTACGCACCGCGCCGTCAGCAGCCGGCCCAGCAGCAGTCGGCGCCGCCG
ATGGACGATTTTGCGGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.032

100

0.509
  ssb Glaesserella parasuis strain SC1401

45.81

100

0.48
  ssb Neisseria meningitidis MC58

45.506

100

0.474
  ssb Neisseria gonorrhoeae MS11

45.506

100

0.474