Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JH290_RS14560 Genome accession   NZ_CP066978
Coordinates   3307273..3307788 (-) Length   171 a.a.
NCBI ID   WP_040940953.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. incanae strain 18048     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3302273..3312788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH290_RS14545 (JH290_14505) - 3302953..3304248 (-) 1296 WP_223646006.1 McrC family protein -
  JH290_RS14550 (JH290_14510) - 3304253..3306781 (-) 2529 WP_223646008.1 AAA family ATPase -
  JH290_RS14555 (JH290_14515) - 3306785..3307081 (-) 297 WP_223646011.1 hypothetical protein -
  JH290_RS14560 (JH290_14520) ssb 3307273..3307788 (-) 516 WP_040940953.1 single-stranded DNA-binding protein Machinery gene
  JH290_RS14565 (JH290_14525) - 3308070..3309068 (+) 999 WP_070690369.1 polyprenyl synthetase family protein -
  JH290_RS14570 (JH290_14530) - 3309313..3310113 (-) 801 WP_223646012.1 dienelactone hydrolase family protein -
  JH290_RS14575 (JH290_14535) murD 3310267..3311673 (-) 1407 WP_076038641.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18575.48 Da        Isoelectric Point: 5.3177

>NTDB_id=523771 JH290_RS14560 WP_040940953.1 3307273..3307788(-) (ssb) [Xanthomonas campestris pv. incanae strain 18048]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRTQAPRQQQGGGGGGGGQDYAPRRQQPAQQQSAPP
MDDFADDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=523771 JH290_RS14560 WP_040940953.1 3307273..3307788(-) (ssb) [Xanthomonas campestris pv. incanae strain 18048]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGAAGGCAATAACCAGGAACGCACCGAGTGGC
ATCGTGTGGTGTTTTTTGGAAAATTGGGCGAGATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
GAGCTGCGCTACGACAAGTACACAGGCCAGGACGGCGTAGAGAAGTACAGCACCGACATTGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGCGGTGAAGGCGGCGGCGGTGGCATGGGCGGCGATCGCCCGCAGCGCACGCAGGCCCCGCGCCAGCAGC
AGGGTGGCGGCGGTGGTGGTGGCGGTCAGGACTACGCACCGCGCCGTCAGCAGCCGGCCCAGCAGCAGTCGGCGCCGCCG
ATGGATGATTTTGCGGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.032

100

0.509
  ssb Glaesserella parasuis strain SC1401

45.81

100

0.48
  ssb Neisseria meningitidis MC58

45.506

100

0.474
  ssb Neisseria gonorrhoeae MS11

45.506

100

0.474