Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JH307_RS07805 Genome accession   NZ_CP066969
Coordinates   1766556..1767071 (+) Length   171 a.a.
NCBI ID   WP_040940953.1    Uniprot ID   -
Organism   Xanthomonas campestris strain 10-16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1761556..1772071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH307_RS07790 (JH307_07780) murD 1762672..1764078 (+) 1407 WP_274501547.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  JH307_RS07795 (JH307_07785) - 1764232..1765032 (+) 801 WP_070690367.1 dienelactone hydrolase family protein -
  JH307_RS07800 (JH307_07790) - 1765276..1766274 (-) 999 WP_070690369.1 polyprenyl synthetase family protein -
  JH307_RS07805 (JH307_07795) ssb 1766556..1767071 (+) 516 WP_040940953.1 single-stranded DNA-binding protein Machinery gene
  JH307_RS07810 (JH307_07800) - 1767257..1767559 (+) 303 WP_225443885.1 hypothetical protein -
  JH307_RS07815 (JH307_07805) - 1767563..1770091 (+) 2529 WP_076038642.1 AAA family ATPase -
  JH307_RS07820 (JH307_07810) - 1770096..1771391 (+) 1296 WP_274509662.1 McrC family protein -
  JH307_RS07825 (JH307_07815) - 1771859..1771993 (+) 135 WP_256267714.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18575.48 Da        Isoelectric Point: 5.3177

>NTDB_id=523705 JH307_RS07805 WP_040940953.1 1766556..1767071(+) (ssb) [Xanthomonas campestris strain 10-16]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRTQAPRQQQGGGGGGGGQDYAPRRQQPAQQQSAPP
MDDFADDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=523705 JH307_RS07805 WP_040940953.1 1766556..1767071(+) (ssb) [Xanthomonas campestris strain 10-16]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGAAGGCAATAACCAGGAACGCACCGAGTGGC
ATCGCGTGGTGTTTTTTGGAAAATTGGGCGAGATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
GAGCTGCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACAGCACCGACATTGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGCGGTGAAGGCGGCGGCGGTGGCATGGGCGGCGATCGCCCGCAGCGCACGCAGGCCCCGCGCCAGCAGC
AGGGTGGCGGCGGTGGTGGTGGCGGTCAGGACTACGCACCGCGCCGTCAGCAGCCGGCCCAGCAGCAGTCGGCACCGCCG
ATGGACGATTTTGCGGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.032

100

0.509
  ssb Glaesserella parasuis strain SC1401

45.81

100

0.48
  ssb Neisseria meningitidis MC58

45.506

100

0.474
  ssb Neisseria gonorrhoeae MS11

45.506

100

0.474