Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JH273_RS18340 Genome accession   NZ_CP066963
Coordinates   4225545..4226060 (+) Length   171 a.a.
NCBI ID   WP_103700093.1    Uniprot ID   -
Organism   Xanthomonas campestris strain 3054     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4220545..4231060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH273_RS18325 (JH273_18290) murD 4221662..4223068 (+) 1407 WP_274507793.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  JH273_RS18330 (JH273_18295) - 4223222..4224021 (+) 800 Protein_3536 dienelactone hydrolase family protein -
  JH273_RS18335 (JH273_18300) - 4224265..4225263 (-) 999 WP_040940952.1 polyprenyl synthetase family protein -
  JH273_RS18340 (JH273_18305) ssb 4225545..4226060 (+) 516 WP_103700093.1 single-stranded DNA-binding protein Machinery gene
  JH273_RS18345 (JH273_18310) - 4226203..4227417 (+) 1215 WP_274507794.1 site-specific integrase -
  JH273_RS18350 (JH273_18315) - 4227407..4228924 (+) 1518 WP_274507795.1 site-specific integrase -
  JH273_RS18355 (JH273_18320) - 4228917..4230920 (+) 2004 WP_274507796.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18545.45 Da        Isoelectric Point: 5.3177

>NTDB_id=523654 JH273_RS18340 WP_103700093.1 4225545..4226060(+) (ssb) [Xanthomonas campestris strain 3054]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRAQAPRQQQGGGGGGGGQDYAPRRQQPAQQQSAPP
MDDFADDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=523654 JH273_RS18340 WP_103700093.1 4225545..4226060(+) (ssb) [Xanthomonas campestris strain 3054]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGAAGGCAATAACCAGGAACGCACCGAGTGGC
ACCGCGTGGTGTTTTTTGGAAAATTGGGCGAGATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
GAGCTGCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACAGCACCGATATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGCGGTGAAGGCGGCGGTGGCGGCATGGGCGGCGATCGCCCGCAGCGCGCGCAGGCCCCGCGCCAGCAGC
AGGGTGGCGGCGGTGGTGGTGGCGGTCAGGACTACGCACCGCGCCGTCAGCAGCCGGCCCAGCAGCAGTCGGCGCCGCCG
ATGGACGATTTTGCGGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.032

100

0.509
  ssb Glaesserella parasuis strain SC1401

45.81

100

0.48
  ssb Neisseria meningitidis MC58

45.455

100

0.468
  ssb Neisseria gonorrhoeae MS11

45.455

100

0.468