Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JH260_RS16545 Genome accession   NZ_CP066959
Coordinates   3778360..3779418 (-) Length   352 a.a.
NCBI ID   WP_016944654.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. incanae strain 4053     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3773360..3784418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH260_RS16525 (JH260_16485) - 3774402..3776369 (-) 1968 WP_070689858.1 type IV pilus secretin PilQ -
  JH260_RS16530 (JH260_16490) - 3776389..3776922 (-) 534 WP_011038332.1 pilus assembly protein PilP -
  JH260_RS16535 (JH260_16495) - 3776919..3777584 (-) 666 WP_011038333.1 type 4a pilus biogenesis protein PilO -
  JH260_RS16540 (JH260_16500) - 3777581..3778360 (-) 780 WP_014508816.1 PilN domain-containing protein -
  JH260_RS16545 (JH260_16505) comM 3778360..3779418 (-) 1059 WP_016944654.1 pilus assembly protein PilM Machinery gene
  JH260_RS16550 (JH260_16510) - 3779634..3782060 (+) 2427 WP_181921871.1 penicillin-binding protein 1A -
  JH260_RS16560 (JH260_16520) - 3782642..3783292 (+) 651 WP_116889243.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37620.24 Da        Isoelectric Point: 4.3924

>NTDB_id=523621 JH260_RS16545 WP_016944654.1 3778360..3779418(-) (comM) [Xanthomonas campestris pv. incanae strain 4053]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=523621 JH260_RS16545 WP_016944654.1 3778360..3779418(-) (comM) [Xanthomonas campestris pv. incanae strain 4053]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTTATTGGTGTCGACATTAGTTCTACTGCGGTCAAGCTATTGCAGCTGTC
GCGCAGCGGAAATCGTTTTCGCGTGGAACATTACGCTGTGGAACCGCTGCCGCCGAACGCGGTGGTGGAAAAGAACATCG
TCGAAGTCGAAGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCAGCGGCC
GTGGCTGGCTCGGCGGTGATCACCAAGCTGATCCCCATGCCAGCGGATCTGGACGATAGCGATCTGGAAGCCCAGGTCGA
GCTGGAAGCCACCAACTACATCCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTCGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCGGCGTCGCGTTCGGAAAACGTCGAGCTGCGCCAATCGGCGCTGGAGCTCGGC
GGCCTGGTCGCCAAGGTGATGGACGTGGAGGCCTTTGCGGTCGAGAACGCCTTCGCACTGGTTGCCAGCGAATTGCCGGT
CGCCGCCGATGCGGTGGTGGCGCTGGTGGACATCGGCGCGACCATGACCACGCTGAGCGTGCTGCGCTCCGGGCGCAGCC
TCTACAGCCGCGAGCAGGTGTTCGGTGGCAAGCAGCTCACCGACGAAGTGATGCGCCGCTACGGCCTGACCTATGAAGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGCCTGCCGGAGAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAGGAAGCGACGGT
GCAGCAGATCAGCCGCCTGTTGCAGTTCTTCTATGCGGGCAGCGAGTTCAATCGCGTCGATTGCATCGTGCTGGCAGGCG
GCTGCGCCGCGTTGTCGCGCCTGCCGGAGATGGTGGAAGAACAGCTGGGCGTGACCACCGTGGTCGCCAACCCCCTGGCA
CAGATGACGCTGGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

50.997

99.716

0.509
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472