Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JH260_RS14280 Genome accession   NZ_CP066959
Coordinates   3233315..3233833 (-) Length   172 a.a.
NCBI ID   WP_042598139.1    Uniprot ID   A0AAJ2X7D4
Organism   Xanthomonas campestris pv. incanae strain 4053     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3228315..3238833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH260_RS14260 (JH260_14240) - 3228393..3228527 (-) 135 WP_256267714.1 hypothetical protein -
  JH260_RS14265 (JH260_14245) - 3228995..3230290 (-) 1296 WP_181920256.1 McrC family protein -
  JH260_RS14270 (JH260_14250) - 3230295..3232823 (-) 2529 WP_274394239.1 AAA family ATPase -
  JH260_RS14275 (JH260_14255) - 3232827..3233123 (-) 297 WP_223646011.1 hypothetical protein -
  JH260_RS14280 (JH260_14260) ssb 3233315..3233833 (-) 519 WP_042598139.1 single-stranded DNA-binding protein Machinery gene
  JH260_RS14285 (JH260_14265) - 3234115..3235113 (+) 999 WP_040940952.1 polyprenyl synthetase family protein -
  JH260_RS14290 (JH260_14270) - 3235358..3236158 (-) 801 WP_070690367.1 dienelactone hydrolase family protein -
  JH260_RS14295 (JH260_14275) murD 3236312..3237718 (-) 1407 WP_274394240.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18602.51 Da        Isoelectric Point: 5.3177

>NTDB_id=523612 JH260_RS14280 WP_042598139.1 3233315..3233833(-) (ssb) [Xanthomonas campestris pv. incanae strain 4053]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGGMGGDRPQRAQAPRQQQGGGGGGGGQDYAPRRQQPAQQQSAP
PMDDFADDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=523612 JH260_RS14280 WP_042598139.1 3233315..3233833(-) (ssb) [Xanthomonas campestris pv. incanae strain 4053]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGTGTAAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGAAGGCAATAACCAGGAACGCACCGAGTGGC
ATCGCGTGGTGTTTTTTGGAAAATTGGGCGAGATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
GAGCTGCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGCGGTGAAGGCGGCGGCGGTGGCGGCATGGGCGGCGATCGCCCGCAGCGCGCGCAGGCCCCGCGCCAGC
AGCAGGGTGGCGGTGGTGGTGGTGGCGGTCAGGACTACGCACCGCGCCGTCAGCAGCCGGCCCAGCAGCAGTCAGCGCCG
CCGATGGACGATTTTGCGGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.237

100

0.5
  ssb Glaesserella parasuis strain SC1401

46.154

100

0.488
  ssb Neisseria meningitidis MC58

45.455

100

0.465
  ssb Neisseria gonorrhoeae MS11

45.455

100

0.465