Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   JH279_RS16595 Genome accession   NZ_CP066956
Coordinates   3782935..3784329 (+) Length   464 a.a.
NCBI ID   WP_274390757.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. incanae strain 8-14     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3777935..3789329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH279_RS16570 (JH279_16515) - 3777993..3778295 (-) 303 WP_011038207.1 type II toxin-antitoxin system RelE/ParE family toxin -
  JH279_RS16575 (JH279_16520) - 3778299..3778709 (-) 411 WP_323549302.1 DNA-binding protein -
  JH279_RS16580 (JH279_16525) sucD 3778813..3779688 (-) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  JH279_RS16585 (JH279_16530) sucC 3779713..3780882 (-) 1170 WP_011038209.1 ADP-forming succinate--CoA ligase subunit beta -
  JH279_RS16590 (JH279_16535) - 3781116..3782726 (+) 1611 WP_116901781.1 HAMP domain-containing sensor histidine kinase -
  JH279_RS16595 (JH279_16540) pilR 3782935..3784329 (+) 1395 WP_274390757.1 sigma-54 dependent transcriptional regulator Regulator
  JH279_RS16600 (JH279_16545) - 3784527..3784883 (+) 357 WP_139328384.1 hypothetical protein -
  JH279_RS16605 (JH279_16550) - 3784883..3785620 (+) 738 WP_274390758.1 zeta toxin family protein -
  JH279_RS16610 (JH279_16555) pilB 3785803..3787530 (-) 1728 WP_274390759.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JH279_RS16615 (JH279_16560) - 3787608..3788420 (-) 813 WP_274390760.1 sterol desaturase family protein -
  JH279_RS16620 (JH279_16565) comP 3788466..3788876 (-) 411 WP_274390761.1 pilin Machinery gene

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50305.70 Da        Isoelectric Point: 6.5131

>NTDB_id=523580 JH279_RS16595 WP_274390757.1 3782935..3784329(+) (pilR) [Xanthomonas campestris pv. incanae strain 8-14]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALNQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAASPGSAA
IEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=523580 JH279_RS16595 WP_274390757.1 3782935..3784329(+) (pilR) [Xanthomonas campestris pv. incanae strain 8-14]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGTAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAGTACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCACTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGATATCAGCGTGCTGCGCGGCCTCGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCTC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCACCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAAGGCGC
ACGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCGGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCGGGCGAAACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCATAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAACTCCGTGTGCCACCGTTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGCCTGGCCCGCAGCCATGGCCGCCCGATTCCCTTGCTCACCCAGTCCGCGCTCGA
TGCCCTGAACCAATACGGCTTCCCGGGCAACGTGCGCGAGCTGGAAAACATCCTCGAACGTGCGCTTGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTCCGCCTGCCCGCCCATGGCGGCCACCGCCTCGCCGCCAGCCCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCCGTGGTCGACATCGATCCCGCCTCGGCCGCCCTGCCCTCTTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGGTGGAACAAGACCAGAACTGCCGCGCAGCTAGGCATCACGTTTCGTGCGC
TGCGCTACAAGCTCAAGAAATTGGGGATGGAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491