Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JH309_RS07275 Genome accession   NZ_CP066955
Coordinates   1718308..1718823 (+) Length   171 a.a.
NCBI ID   WP_040940953.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain 08288     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1713308..1723823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH309_RS07260 (JH309_07215) murD 1714425..1715831 (+) 1407 WP_011037868.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  JH309_RS07265 (JH309_07220) - 1715985..1716785 (+) 801 WP_043877734.1 dienelactone hydrolase family protein -
  JH309_RS07270 (JH309_07225) - 1717029..1718027 (-) 999 WP_011037866.1 polyprenyl synthetase family protein -
  JH309_RS07275 (JH309_07230) ssb 1718308..1718823 (+) 516 WP_040940953.1 single-stranded DNA-binding protein Machinery gene
  JH309_RS07280 (JH309_07235) - 1719009..1719311 (+) 303 WP_225443885.1 hypothetical protein -
  JH309_RS07285 (JH309_07240) - 1719315..1721678 (+) 2364 WP_274349839.1 AAA family ATPase -
  JH309_RS07290 (JH309_07245) - 1721689..1723056 (-) 1368 WP_011035783.1 IS5-like element IS1478 family transposase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18575.48 Da        Isoelectric Point: 5.3177

>NTDB_id=523559 JH309_RS07275 WP_040940953.1 1718308..1718823(+) (ssb) [Xanthomonas campestris pv. campestris strain 08288]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRTQAPRQQQGGGGGGGGQDYAPRRQQPAQQQSAPP
MDDFADDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=523559 JH309_RS07275 WP_040940953.1 1718308..1718823(+) (ssb) [Xanthomonas campestris pv. campestris strain 08288]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCCATCACCCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGAAGGCAATAACCAGGAACGCACCGAGTGGC
ATCGCGTGGTGTTTTTTGGAAAATTGGGCGAGATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
GAGCTGCGCTACGACAAGTACACCGGCCAGGACGGCGTAGAGAAGTACAGCACCGACATTGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGCGGTGAAGGCGGCGGCGGTGGCATGGGCGGCGATCGCCCGCAGCGCACGCAGGCCCCGCGCCAGCAGC
AGGGTGGCGGCGGTGGTGGTGGCGGTCAGGACTACGCACCGCGCCGTCAGCAGCCGGCCCAGCAGCAGTCGGCGCCGCCG
ATGGACGATTTTGCGGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.032

100

0.509
  ssb Glaesserella parasuis strain SC1401

45.81

100

0.48
  ssb Neisseria meningitidis MC58

45.506

100

0.474
  ssb Neisseria gonorrhoeae MS11

45.506

100

0.474