Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JH282_RS06990 Genome accession   NZ_CP066953
Coordinates   1661123..1661638 (+) Length   171 a.a.
NCBI ID   WP_040940953.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain 10103     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1656123..1666638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH282_RS06975 (JH282_06965) murD 1657240..1658646 (+) 1407 WP_011037868.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  JH282_RS06980 (JH282_06970) - 1658800..1659600 (+) 801 WP_043877734.1 dienelactone hydrolase family protein -
  JH282_RS06985 (JH282_06975) - 1659844..1660842 (-) 999 WP_011037866.1 polyprenyl synthetase family protein -
  JH282_RS06990 (JH282_06980) ssb 1661123..1661638 (+) 516 WP_040940953.1 single-stranded DNA-binding protein Machinery gene
  JH282_RS06995 (JH282_06985) - 1661830..1662126 (+) 297 WP_223646011.1 hypothetical protein -
  JH282_RS07000 (JH282_06990) - 1662130..1664658 (+) 2529 WP_011037863.1 AAA family ATPase -
  JH282_RS07005 (JH282_06995) - 1664681..1665958 (+) 1278 WP_225443886.1 McrC family protein -
  JH282_RS07010 (JH282_07000) - 1666426..1666560 (+) 135 WP_272909618.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18575.48 Da        Isoelectric Point: 5.3177

>NTDB_id=523541 JH282_RS06990 WP_040940953.1 1661123..1661638(+) (ssb) [Xanthomonas campestris pv. campestris strain 10103]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRTQAPRQQQGGGGGGGGQDYAPRRQQPAQQQSAPP
MDDFADDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=523541 JH282_RS06990 WP_040940953.1 1661123..1661638(+) (ssb) [Xanthomonas campestris pv. campestris strain 10103]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCCATCACCCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGAAGGCAATAACCAGGAACGCACCGAGTGGC
ATCGCGTGGTGTTTTTTGGAAAATTGGGCGAGATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
GAGCTGCGCTACGACAAGTACACCGGCCAGGACGGCGTAGAGAAGTACAGCACCGACATTGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGCGGTGAAGGCGGCGGCGGTGGCATGGGCGGCGATCGCCCGCAGCGCACGCAGGCCCCGCGCCAGCAGC
AGGGTGGCGGCGGTGGTGGTGGCGGTCAGGACTACGCACCGCGCCGTCAGCAGCCGGCCCAGCAGCAGTCGGCGCCGCCG
ATGGACGATTTTGCGGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.032

100

0.509
  ssb Glaesserella parasuis strain SC1401

45.81

100

0.48
  ssb Neisseria meningitidis MC58

45.506

100

0.474
  ssb Neisseria gonorrhoeae MS11

45.506

100

0.474