Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JH278_RS06890 Genome accession   NZ_CP066949
Coordinates   1640494..1641009 (+) Length   171 a.a.
NCBI ID   WP_228443985.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain 0659     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1635494..1646009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH278_RS06875 (JH278_06875) murD 1636610..1638016 (+) 1407 WP_274375590.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  JH278_RS06880 (JH278_06880) - 1638170..1638970 (+) 801 WP_070690367.1 dienelactone hydrolase family protein -
  JH278_RS06885 (JH278_06885) - 1639214..1640212 (-) 999 WP_050912122.1 polyprenyl synthetase family protein -
  JH278_RS06890 (JH278_06890) ssb 1640494..1641009 (+) 516 WP_228443985.1 single-stranded DNA-binding protein Machinery gene
  JH278_RS06895 (JH278_06895) - 1641195..1641497 (+) 303 WP_225443885.1 hypothetical protein -
  JH278_RS06900 (JH278_06900) - 1641501..1644029 (+) 2529 WP_274341805.1 AAA family ATPase -
  JH278_RS06905 (JH278_06905) - 1644034..1645329 (+) 1296 WP_176748044.1 McrC family protein -
  JH278_RS06910 (JH278_06910) - 1645791..1645931 (+) 141 WP_011269602.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18545.45 Da        Isoelectric Point: 5.3177

>NTDB_id=523523 JH278_RS06890 WP_228443985.1 1640494..1641009(+) (ssb) [Xanthomonas campestris pv. campestris strain 0659]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGGMGGDRPQRAQAPRQQQGGGGGGGQDYAPRRQQPAQQQSAPP
MDDFADDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=523523 JH278_RS06890 WP_228443985.1 1640494..1641009(+) (ssb) [Xanthomonas campestris pv. campestris strain 0659]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGAAGGCAATAACCAGGAACGCACCGAGTGGC
ATCGCGTGGTGTTTTTTGGAAAATTGGGCGAGATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
GAGCTGCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGCGGTGAAGGCGGCGGCGGTGGCGGCATGGGCGGCGATCGCCCGCAGCGCGCGCAGGCCCCGCGCCAGC
AGCAGGGTGGCGGTGGTGGTGGCGGTCAGGACTACGCACCGCGCCGTCAGCAGCCGGCCCAGCAGCAGTCAGCGCCGCCG
ATGGACGATTTTGCGGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.486

100

0.503
  ssb Glaesserella parasuis strain SC1401

46.961

100

0.497
  ssb Neisseria meningitidis MC58

47.191

100

0.491
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.491