Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JH306_RS07240 Genome accession   NZ_CP066945
Coordinates   1718553..1719071 (+) Length   172 a.a.
NCBI ID   WP_011037865.1    Uniprot ID   Q8P778
Organism   Xanthomonas campestris pv. campestris strain 08284     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1713553..1724071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH306_RS07225 (JH306_07205) murD 1714673..1716079 (+) 1407 WP_011037868.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  JH306_RS07230 (JH306_07210) - 1716233..1717033 (+) 801 WP_012437815.1 dienelactone hydrolase family protein -
  JH306_RS07235 (JH306_07215) - 1717274..1718272 (-) 999 WP_011037866.1 polyprenyl synthetase family protein -
  JH306_RS07240 (JH306_07220) ssb 1718553..1719071 (+) 519 WP_011037865.1 single-stranded DNA-binding protein Machinery gene
  JH306_RS07245 (JH306_07225) - 1719263..1719559 (+) 297 WP_223646011.1 hypothetical protein -
  JH306_RS07250 (JH306_07230) - 1719563..1722091 (+) 2529 WP_011037863.1 AAA family ATPase -
  JH306_RS07255 (JH306_07235) - 1722096..1723391 (+) 1296 WP_181920256.1 McrC family protein -
  JH306_RS07260 (JH306_07240) - 1723859..1723993 (+) 135 WP_256267714.1 hypothetical protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18632.53 Da        Isoelectric Point: 5.3177

>NTDB_id=523469 JH306_RS07240 WP_011037865.1 1718553..1719071(+) (ssb) [Xanthomonas campestris pv. campestris strain 08284]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGGMGGDRPQRTQAPRQQQGGGGGGGGQDYAPRRQQPAQQQSAP
PMDDFADDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=523469 JH306_RS07240 WP_011037865.1 1718553..1719071(+) (ssb) [Xanthomonas campestris pv. campestris strain 08284]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGAAGGCAATAACCAGGAACGCACCGAGTGGC
ACCGCGTGGTGTTTTTTGGAAAATTGGGCGAGATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
GAGCTGCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGCGGTGAAGGCGGCGGTGGCGGCGGCATGGGCGGCGATCGCCCGCAGCGCACGCAGGCCCCGCGCCAGC
AGCAGGGTGGCGGCGGTGGTGGTGGCGGTCAGGACTACGCACCGCGCCGTCAGCAGCCGGCCCAGCAGCAGTCGGCGCCG
CCGATGGACGATTTTGCGGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8P778

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.237

100

0.5
  ssb Glaesserella parasuis strain SC1401

46.703

100

0.494
  ssb Neisseria meningitidis MC58

45.506

100

0.471
  ssb Neisseria gonorrhoeae MS11

45.506

100

0.471