Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JH313_RS07115 Genome accession   NZ_CP066937
Coordinates   1684753..1685271 (+) Length   172 a.a.
NCBI ID   WP_011037865.1    Uniprot ID   Q8P778
Organism   Xanthomonas campestris pv. campestris strain 13108G     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1679753..1690271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH313_RS07100 (JH313_07090) murD 1680872..1682278 (+) 1407 WP_019237461.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  JH313_RS07105 (JH313_07095) - 1682432..1683232 (+) 801 WP_019237462.1 dienelactone hydrolase family protein -
  JH313_RS07110 (JH313_07100) - 1683474..1684472 (-) 999 WP_050912122.1 polyprenyl synthetase family protein -
  JH313_RS07115 (JH313_07105) ssb 1684753..1685271 (+) 519 WP_011037865.1 single-stranded DNA-binding protein Machinery gene
  JH313_RS07120 (JH313_07110) - 1685457..1685759 (+) 303 WP_225443885.1 hypothetical protein -
  JH313_RS07125 (JH313_07115) - 1685763..1688291 (+) 2529 WP_050912123.1 AAA family ATPase -
  JH313_RS07130 (JH313_07120) - 1688296..1689405 (+) 1110 WP_235610941.1 McrC family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18632.53 Da        Isoelectric Point: 5.3177

>NTDB_id=523415 JH313_RS07115 WP_011037865.1 1684753..1685271(+) (ssb) [Xanthomonas campestris pv. campestris strain 13108G]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGGMGGDRPQRTQAPRQQQGGGGGGGGQDYAPRRQQPAQQQSAP
PMDDFADDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=523415 JH313_RS07115 WP_011037865.1 1684753..1685271(+) (ssb) [Xanthomonas campestris pv. campestris strain 13108G]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGAAGGCAATAACCAGGAACGCACCGAGTGGC
ACCGCGTGGTGTTTTTTGGAAAATTGGGCGAGATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
GAGCTGCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGCGGTGAAGGCGGCGGTGGCGGCGGCATGGGCGGCGATCGCCCGCAGCGCACGCAGGCCCCGCGCCAGC
AGCAGGGTGGCGGCGGTGGTGGTGGCGGTCAGGACTACGCACCGCGCCGTCAGCAGCCGGCCCAGCAGCAGTCGGCGCCG
CCGATGGACGATTTTGCGGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8P778

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.237

100

0.5
  ssb Glaesserella parasuis strain SC1401

46.703

100

0.494
  ssb Neisseria meningitidis MC58

45.506

100

0.471
  ssb Neisseria gonorrhoeae MS11

45.506

100

0.471