Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | JH304_RS05280 | Genome accession | NZ_CP066933 |
| Coordinates | 1242359..1243753 (-) | Length | 464 a.a. |
| NCBI ID | WP_012437607.1 | Uniprot ID | - |
| Organism | Xanthomonas campestris pv. campestris strain 10108 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1192515..1248695 | 1242359..1243753 | within | 0 |
Gene organization within MGE regions
Location: 1192515..1248695
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JH304_RS05005 (JH304_04995) | - | 1194119..1194547 (+) | 429 | WP_145998822.1 | hypothetical protein | - |
| JH304_RS05010 (JH304_05000) | - | 1194932..1195720 (-) | 789 | WP_145998823.1 | hypothetical protein | - |
| JH304_RS05015 (JH304_05005) | - | 1195794..1196687 (-) | 894 | WP_145998824.1 | hypothetical protein | - |
| JH304_RS05020 (JH304_05010) | - | 1196853..1197233 (-) | 381 | WP_172973787.1 | hypothetical protein | - |
| JH304_RS05025 (JH304_05015) | - | 1197230..1197544 (-) | 315 | WP_218065344.1 | hypothetical protein | - |
| JH304_RS05030 (JH304_05020) | - | 1197594..1198355 (-) | 762 | WP_100666316.1 | hypothetical protein | - |
| JH304_RS05035 (JH304_05025) | - | 1198533..1198832 (+) | 300 | WP_230428394.1 | helix-turn-helix transcriptional regulator | - |
| JH304_RS05040 (JH304_05030) | - | 1198901..1199332 (+) | 432 | WP_100666318.1 | hypothetical protein | - |
| JH304_RS05045 (JH304_05035) | - | 1199337..1199789 (-) | 453 | WP_145998825.1 | hypothetical protein | - |
| JH304_RS05050 (JH304_05040) | - | 1199992..1201392 (-) | 1401 | WP_218065345.1 | site-specific integrase | - |
| JH304_RS05055 (JH304_05045) | - | 1202000..1202515 (-) | 516 | WP_100666321.1 | hypothetical protein | - |
| JH304_RS05060 (JH304_05050) | - | 1202604..1203089 (+) | 486 | WP_145998826.1 | hypothetical protein | - |
| JH304_RS05065 (JH304_05055) | - | 1203222..1204706 (-) | 1485 | WP_100666322.1 | hypothetical protein | - |
| JH304_RS05070 (JH304_05060) | - | 1204786..1205751 (-) | 966 | WP_145998827.1 | hypothetical protein | - |
| JH304_RS05075 (JH304_05065) | - | 1206141..1206401 (+) | 261 | WP_145998828.1 | hypothetical protein | - |
| JH304_RS05080 (JH304_05070) | - | 1206388..1206885 (-) | 498 | WP_152091502.1 | hypothetical protein | - |
| JH304_RS05085 (JH304_05075) | - | 1206995..1207525 (-) | 531 | WP_152091503.1 | hypothetical protein | - |
| JH304_RS05090 (JH304_05080) | - | 1207560..1208372 (-) | 813 | WP_152091504.1 | hypothetical protein | - |
| JH304_RS05095 (JH304_05085) | - | 1208369..1208677 (-) | 309 | WP_152091505.1 | hypothetical protein | - |
| JH304_RS05100 (JH304_05090) | radC | 1208888..1209367 (+) | 480 | WP_152091506.1 | DNA repair protein RadC | - |
| JH304_RS05105 (JH304_05095) | - | 1209436..1209612 (+) | 177 | WP_172973789.1 | hypothetical protein | - |
| JH304_RS05110 (JH304_05100) | - | 1209832..1210473 (+) | 642 | WP_152091507.1 | DUF1629 domain-containing protein | - |
| JH304_RS05115 (JH304_05105) | - | 1210509..1213094 (+) | 2586 | WP_218065346.1 | XVIPCD domain-containing protein | - |
| JH304_RS05120 (JH304_05110) | - | 1213334..1214137 (-) | 804 | WP_230428395.1 | hypothetical protein | - |
| JH304_RS05125 (JH304_05115) | - | 1214421..1214927 (-) | 507 | WP_230428396.1 | hypothetical protein | - |
| JH304_RS05130 (JH304_05120) | - | 1215004..1215639 (+) | 636 | WP_230428397.1 | hypothetical protein | - |
| JH304_RS05135 (JH304_05125) | - | 1215757..1215915 (+) | 159 | WP_172973790.1 | hypothetical protein | - |
| JH304_RS05145 (JH304_05135) | - | 1217984..1218460 (-) | 477 | WP_152091510.1 | hypothetical protein | - |
| JH304_RS05150 (JH304_05140) | - | 1218622..1219380 (-) | 759 | WP_234565086.1 | ATP-dependent endonuclease | - |
| JH304_RS05155 (JH304_05145) | - | 1219990..1219991 (-) | 2 | WP_087942062.1 | IS5 family transposase | - |
| JH304_RS05160 (JH304_05150) | - | 1220236..1221447 (-) | 1212 | WP_218065348.1 | AAA family ATPase | - |
| JH304_RS05165 (JH304_05155) | traD | 1221983..1222282 (-) | 300 | WP_100666201.1 | conjugal transfer protein TraD | - |
| JH304_RS05170 (JH304_05160) | - | 1222549..1224144 (+) | 1596 | WP_100666199.1 | MobA/MobL family protein | - |
| JH304_RS05175 (JH304_05165) | - | 1224197..1224538 (-) | 342 | WP_100666197.1 | hypothetical protein | - |
| JH304_RS05180 (JH304_05170) | - | 1225232..1225660 (+) | 429 | WP_012437589.1 | hypothetical protein | - |
| JH304_RS05185 (JH304_05175) | - | 1225903..1226133 (-) | 231 | WP_157382680.1 | hypothetical protein | - |
| JH304_RS05190 (JH304_05180) | - | 1226197..1226343 (+) | 147 | WP_040940792.1 | hypothetical protein | - |
| JH304_RS05195 (JH304_05185) | - | 1226528..1226923 (+) | 396 | WP_016945003.1 | hypothetical protein | - |
| JH304_RS05200 (JH304_05190) | - | 1227014..1227406 (+) | 393 | WP_012437593.1 | H-NS family nucleoid-associated regulatory protein | - |
| JH304_RS05205 (JH304_05195) | glgX | 1227940..1230069 (-) | 2130 | WP_016945001.1 | glycogen debranching protein GlgX | - |
| JH304_RS05210 (JH304_05200) | rimK | 1230563..1231438 (+) | 876 | WP_016945000.1 | 30S ribosomal protein S6--L-glutamate ligase | - |
| JH304_RS05215 (JH304_05205) | - | 1231661..1232134 (+) | 474 | WP_012437597.1 | hypothetical protein | - |
| JH304_RS05220 (JH304_05210) | - | 1232165..1232842 (+) | 678 | WP_003490678.1 | response regulator transcription factor | - |
| JH304_RS05225 (JH304_05215) | - | 1232835..1234169 (+) | 1335 | WP_012437598.1 | HAMP domain-containing sensor histidine kinase | - |
| JH304_RS05230 (JH304_05220) | - | 1234312..1234803 (-) | 492 | WP_011038220.1 | GNAT family N-acetyltransferase | - |
| JH304_RS05235 (JH304_05225) | - | 1234800..1235090 (-) | 291 | WP_011038219.1 | DUF1778 domain-containing protein | - |
| JH304_RS05240 (JH304_05230) | - | 1235165..1235566 (-) | 402 | WP_019237348.1 | SymE family type I addiction module toxin | - |
| JH304_RS05245 (JH304_05235) | coaE | 1236098..1236721 (-) | 624 | WP_011038217.1 | dephospho-CoA kinase | - |
| JH304_RS05250 (JH304_05240) | - | 1236735..1237598 (-) | 864 | WP_011038216.1 | A24 family peptidase | - |
| JH304_RS05255 (JH304_05245) | pilC | 1237605..1238861 (-) | 1257 | WP_011038215.1 | type II secretion system F family protein | Machinery gene |
| JH304_RS05260 (JH304_05250) | pilE | 1239188..1239628 (+) | 441 | WP_011038214.1 | pilin | Machinery gene |
| JH304_RS05265 (JH304_05255) | - | 1239708..1240142 (+) | 435 | WP_011038213.1 | pilin | - |
| JH304_RS05270 (JH304_05260) | pilB | 1240207..1241940 (+) | 1734 | WP_011038212.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| JH304_RS05280 (JH304_05270) | pilR | 1242359..1243753 (-) | 1395 | WP_012437607.1 | sigma-54 dependent transcriptional regulator | Regulator |
| JH304_RS05285 (JH304_05275) | - | 1243962..1245572 (-) | 1611 | WP_012437608.1 | HAMP domain-containing sensor histidine kinase | - |
| JH304_RS05290 (JH304_05280) | sucC | 1245806..1246975 (+) | 1170 | WP_012437609.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| JH304_RS05295 (JH304_05285) | sucD | 1247000..1247875 (+) | 876 | WP_011038208.1 | succinate--CoA ligase subunit alpha | - |
| JH304_RS05300 (JH304_05290) | - | 1247979..1248389 (+) | 411 | WP_029628876.1 | DNA-binding protein | - |
| JH304_RS05305 (JH304_05295) | - | 1248393..1248695 (+) | 303 | WP_011038207.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
Sequence
Protein
Download Length: 464 a.a. Molecular weight: 50253.62 Da Isoelectric Point: 6.3587
>NTDB_id=523356 JH304_RS05280 WP_012437607.1 1242359..1243753(-) (pilR) [Xanthomonas campestris pv. campestris strain 10108]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGTAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGTAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME
Nucleotide
Download Length: 1395 bp
>NTDB_id=523356 JH304_RS05280 WP_012437607.1 1242359..1243753(-) (pilR) [Xanthomonas campestris pv. campestris strain 10108]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCCC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAAAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCCGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
GTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAACTCCGTGTTCCACCGCTGCGCGAGCGCAGTGGCGATCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGGCTGGCCCGCAGCCATGGCCGCCCGATTCCGCTGCTGACCCAGTCAGCCCTGGA
TGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGATCTGCGCCTGCCCGCCCATGGCGGCCACCGCCTTGCCGCCAGCCCGGGCACCGCTGCG
GTTGAACCGCGCGAAGCGGTGGTCGACATCGACCCGGCTTCCTCCGCCCTGCCCTCCTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCCCAGCTCGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTGAAGAAACTGGGGATGGAGTAG
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCCC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAAAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCCGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
GTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAACTCCGTGTTCCACCGCTGCGCGAGCGCAGTGGCGATCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGGCTGGCCCGCAGCCATGGCCGCCCGATTCCGCTGCTGACCCAGTCAGCCCTGGA
TGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGATCTGCGCCTGCCCGCCCATGGCGGCCACCGCCTTGCCGCCAGCCCGGGCACCGCTGCG
GTTGAACCGCGCGAAGCGGTGGTCGACATCGACCCGGCTTCCTCCGCCCTGCCCTCCTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCCCAGCTCGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTGAAGAAACTGGGGATGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
63.067 |
99.784 |
0.629 |
| pilR | Acinetobacter baumannii strain A118 |
49.138 |
100 |
0.491 |