Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JH264_RS16475 Genome accession   NZ_CP066930
Coordinates   3767981..3769039 (-) Length   352 a.a.
NCBI ID   WP_076053982.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. raphani strain 719     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3762981..3774039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH264_RS16455 (JH264_16405) - 3764140..3766011 (-) 1872 WP_076053989.1 type IV pilus secretin PilQ family protein -
  JH264_RS16460 (JH264_16410) - 3766031..3766564 (-) 534 WP_011038332.1 pilus assembly protein PilP -
  JH264_RS16465 (JH264_16415) - 3766561..3767226 (-) 666 WP_076053986.1 type 4a pilus biogenesis protein PilO -
  JH264_RS16470 (JH264_16420) - 3767223..3767981 (-) 759 WP_076053984.1 PilN domain-containing protein -
  JH264_RS16475 (JH264_16425) comM 3767981..3769039 (-) 1059 WP_076053982.1 pilus assembly protein PilM Machinery gene
  JH264_RS16480 (JH264_16430) - 3769255..3771681 (+) 2427 WP_019237291.1 penicillin-binding protein 1A -
  JH264_RS16490 (JH264_16440) - 3772261..3772881 (+) 621 WP_076053980.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37634.26 Da        Isoelectric Point: 4.3924

>NTDB_id=523315 JH264_RS16475 WP_076053982.1 3767981..3769039(-) (comM) [Xanthomonas campestris pv. raphani strain 719]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEIEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=523315 JH264_RS16475 WP_076053982.1 3767981..3769039(-) (comM) [Xanthomonas campestris pv. raphani strain 719]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTTATTGGTGTCGACATCAGTTCCACTGCGGTCAAGCTATTGCAGCTGTC
GCGCAGCGGAAATCGTTTTCGCGTGGAACATTACGCTGTGGAACCGCTGCCGCCGAATGCGGTGGTGGAAAAGAACATCG
TCGAAGTCGAAGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCAGCGGCC
GTGGCTGGCTCGGCGGTGATTACCAAGCTGATCCCCATGCCGGCGGATCTGGACGATAGCGATCTGGAAGCCCAGGTCGA
GCTGGAAGCCACCAACTACATCCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTCGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCTGCGTCGCGTTCGGAGAACGTCGAGCTGCGCCAATCGGCGCTGGAGCTCGGC
GGCCTGGTCGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTTCGCACTGGTTGCCAGCGAATTGCCGGT
TGCCGCCGATGCGGTGGTGGCGCTGGTGGACATCGGCGCGACCATGACCACGCTCAGCGTGCTGCGCTCAGGGCGCAGCC
TCTACAGCCGCGAGCAGGTGTTCGGTGGCAAGCAGCTCACCGACGAAGTGATGCGCCGCTATGGCCTGACCTATGAAGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGCCTGCCGGAGAGCTACGAGATCGAAGTGCTGGAGCCGTTCAAGGAAGCGACGGT
GCAGCAGATCAGCCGCCTGTTGCAGTTCTTCTATGCGGGCAGCGAGTTCAATCGCGTCGATTGCATCGTGCTGGCAGGCG
GCTGCGCCGCGTTGTCGCGCCTGCCGGAGATGGTGGAAGAACAGCTGGGCGTGACCACCGTGGTCGCCAACCCGCTGGCA
CAGATGACGCTGGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

51.42

100

0.514
  pilM Acinetobacter baumannii D1279779

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

50.997

99.716

0.509
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472