Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JH264_RS14210 Genome accession   NZ_CP066930
Coordinates   3222915..3223433 (-) Length   172 a.a.
NCBI ID   WP_042598139.1    Uniprot ID   A0AAJ2X7D4
Organism   Xanthomonas campestris pv. raphani strain 719     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3217915..3228433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH264_RS14185 (JH264_14155) - 3218248..3219624 (-) 1377 WP_076054513.1 HAMP domain-containing sensor histidine kinase -
  JH264_RS14190 (JH264_14160) - 3219621..3220304 (-) 684 WP_202863379.1 response regulator transcription factor -
  JH264_RS14195 (JH264_14165) - 3220444..3221415 (-) 972 WP_076054511.1 aspartyl/asparaginyl beta-hydroxylase domain-containing protein -
  JH264_RS14200 (JH264_14170) - 3221474..3222157 (-) 684 WP_076054510.1 MipA/OmpV family protein -
  JH264_RS14205 - 3222277..3222696 (+) 420 WP_237384940.1 hypothetical protein -
  JH264_RS14210 (JH264_14180) ssb 3222915..3223433 (-) 519 WP_042598139.1 single-stranded DNA-binding protein Machinery gene
  JH264_RS14215 (JH264_14185) - 3223715..3224713 (+) 999 WP_042598138.1 polyprenyl synthetase family protein -
  JH264_RS14220 (JH264_14190) - 3224956..3225756 (-) 801 WP_070690367.1 dienelactone hydrolase family protein -
  JH264_RS14225 (JH264_14195) murD 3225911..3227317 (-) 1407 WP_014508423.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18602.51 Da        Isoelectric Point: 5.3177

>NTDB_id=523307 JH264_RS14210 WP_042598139.1 3222915..3223433(-) (ssb) [Xanthomonas campestris pv. raphani strain 719]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGGMGGDRPQRAQAPRQQQGGGGGGGGQDYAPRRQQPAQQQSAP
PMDDFADDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=523307 JH264_RS14210 WP_042598139.1 3222915..3223433(-) (ssb) [Xanthomonas campestris pv. raphani strain 719]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCAATCACCCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGAAGGCAATAACCAGGAACGCACCGAGTGGC
ACCGCGTGGTGTTTTTTGGAAAATTGGGCGAGATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
GAGCTGCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGACGCGGTGAAGGTGGCGGTGGTGGCGGCATGGGCGGCGATCGCCCGCAGCGCGCGCAGGCCCCGCGCCAGC
AGCAGGGTGGCGGCGGTGGTGGTGGCGGTCAGGACTACGCACCGCGCCGTCAGCAGCCGGCCCAGCAGCAGTCGGCGCCG
CCGATGGATGATTTTGCGGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.237

100

0.5
  ssb Glaesserella parasuis strain SC1401

46.154

100

0.488
  ssb Neisseria meningitidis MC58

45.455

100

0.465
  ssb Neisseria gonorrhoeae MS11

45.455

100

0.465