Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JH261_RS07200 Genome accession   NZ_CP066926
Coordinates   1735671..1736198 (+) Length   175 a.a.
NCBI ID   WP_274318421.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. incanae strain CFBP6690     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1730671..1741198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH261_RS07185 (JH261_07155) murD 1731789..1733195 (+) 1407 WP_274318418.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  JH261_RS07190 (JH261_07160) - 1733348..1734148 (+) 801 WP_274318419.1 dienelactone hydrolase family protein -
  JH261_RS07195 (JH261_07165) - 1734391..1735389 (-) 999 WP_274318420.1 polyprenyl synthetase family protein -
  JH261_RS07200 (JH261_07170) ssb 1735671..1736198 (+) 528 WP_274318421.1 single-stranded DNA-binding protein Machinery gene
  JH261_RS07205 (JH261_07175) - 1736390..1736686 (+) 297 WP_223646011.1 hypothetical protein -
  JH261_RS07210 (JH261_07180) - 1736690..1739218 (+) 2529 WP_011037863.1 AAA family ATPase -
  JH261_RS07215 (JH261_07185) - 1739241..1740518 (+) 1278 WP_228428682.1 McrC family protein -
  JH261_RS07220 (JH261_07190) - 1740981..1741121 (+) 141 WP_274318422.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18773.66 Da        Isoelectric Point: 5.3177

>NTDB_id=523254 JH261_RS07200 WP_274318421.1 1735671..1736198(+) (ssb) [Xanthomonas campestris pv. incanae strain CFBP6690]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGGMGGDRPQRAQAPRQQQGGGGGGGGGGGQDYAPRRQQPAQQQ
SAPPMDDFADDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=523254 JH261_RS07200 WP_274318421.1 1735671..1736198(+) (ssb) [Xanthomonas campestris pv. incanae strain CFBP6690]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGAAGGCAATAACCAGGAACGCACCGAGTGGC
ACCGCGTGGTGTTTTTTGGAAAATTGGGCGAGATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
GAGCTGCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGCGGTGAAGGCGGCGGCGGTGGCGGCATGGGCGGCGATCGCCCGCAGCGCGCGCAGGCCCCGCGCCAGC
AGCAGGGTGGCGGCGGTGGTGGTGGTGGTGGTGGCGGTCAGGACTACGCACCGCGCCGTCAGCAGCCGGCCCAGCAGCAG
TCGGCGCCGCCGATGGATGATTTTGCGGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

45.503

100

0.491
  ssb Glaesserella parasuis strain SC1401

46.409

100

0.48
  ssb Neisseria meningitidis MC58

46.067

100

0.469
  ssb Neisseria gonorrhoeae MS11

46.067

100

0.469