Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JH314_RS17485 Genome accession   NZ_CP066925
Coordinates   3956695..3957753 (-) Length   352 a.a.
NCBI ID   WP_337999488.1    Uniprot ID   -
Organism   Xanthomonas campestris strain CFBP5824     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3951695..3962753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH314_RS17465 (JH314_17385) - 3952773..3954740 (-) 1968 WP_070689858.1 type IV pilus secretin PilQ family protein -
  JH314_RS17470 (JH314_17390) - 3954760..3955293 (-) 534 WP_011038332.1 pilus assembly protein PilP -
  JH314_RS17475 (JH314_17395) - 3955290..3955955 (-) 666 WP_274339207.1 type 4a pilus biogenesis protein PilO -
  JH314_RS17480 (JH314_17400) - 3955952..3956695 (-) 744 WP_050912059.1 PilN domain-containing protein -
  JH314_RS17485 (JH314_17405) comM 3956695..3957753 (-) 1059 WP_337999488.1 pilus assembly protein PilM Machinery gene
  JH314_RS17490 (JH314_17410) - 3957969..3960395 (+) 2427 WP_162277067.1 penicillin-binding protein 1A -
  JH314_RS17495 (JH314_17415) - 3960837..3961487 (+) 651 WP_076038420.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37798.39 Da        Isoelectric Point: 4.4860

>NTDB_id=523245 JH314_RS17485 WP_337999488.1 3956695..3957753(-) (comM) [Xanthomonas campestris strain CFBP5824]
MGFYPRVSRHLVGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=523245 JH314_RS17485 WP_337999488.1 3956695..3957753(-) (comM) [Xanthomonas campestris strain CFBP5824]
GTGGGCTTTTACCCAAGAGTCAGTCGCCACTTAGTTGGTGTCGACATCAGTTCCACTGCGGTCAAGCTATTGCAGCTGTC
GCGCAGCGGAAATCGTTTCCGCGTGGAACATTACGCTGTGGAACCGCTGCCGCCGAACGCGGTGGTGGAAAAGAACATCG
TCGAAGTCGAAGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCAGCGGCC
GTGGCTGGCTCGGCGGTGATCACCAAGCTGATCCCCATGCCGGCGGATCTGGACGATAGCGATCTGGAAGCCCAGGTCGA
GCTGGAAGCCACCAACTACATCCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTCGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCGGCGTCGCGTTCGGAAAACGTCGAGCTGCGCCAATCGGCGCTGGAGCTCGGT
GGGCTGGTCGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTTCGCACTGGTTGCCAGCGAATTGCCGGT
CGCCGCCGATGCGGTGGTGGCGCTGGTGGACATCGGCGCGACCATGACCACGTTGAGCGTGCTGCGCTCAGGGCGCAGCC
TCTACAGCCGCGAGCAGGTGTTCGGTGGCAAGCAACTCACCGACGAAGTGATGCGCCGCTACGGCCTGACCTATGAAGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGCCTGCCGGAGAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAGGAAGCGACGGT
GCAGCAGATCAGCCGCCTGTTGCAGTTCTTCTATGCGGGCAGCGAATTCAATCGCGTCGATTGCATCGTGCTGGCAGGCG
GTTGCGCGGCGTTGTCGCGCCTGCCGGAGATGGTGGAAGAACAGCTGGGCGTGACCACCGTGGTCGCCAACCCGCTGGCA
CAGATGACGCTGGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

51.567

99.716

0.514
  comM Acinetobacter nosocomialis M2

50.852

100

0.509
  pilM Acinetobacter baumannii D1279779

50.568

100

0.506
  pilM Legionella pneumophila strain ERS1305867

47.246

98.011

0.463