Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JH280_RS16825 Genome accession   NZ_CP066922
Coordinates   3878319..3879377 (-) Length   352 a.a.
NCBI ID   WP_016944654.1    Uniprot ID   -
Organism   Xanthomonas campestris strain 5053     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3873319..3884377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH280_RS16805 (JH280_16735) - 3874466..3876337 (-) 1872 WP_274347487.1 type IV pilus secretin PilQ -
  JH280_RS16810 (JH280_16740) - 3876357..3876890 (-) 534 WP_011038332.1 pilus assembly protein PilP -
  JH280_RS16815 (JH280_16745) - 3876887..3877552 (-) 666 WP_011038333.1 type 4a pilus biogenesis protein PilO -
  JH280_RS16820 (JH280_16750) - 3877549..3878319 (-) 771 WP_274347488.1 PilN domain-containing protein -
  JH280_RS16825 (JH280_16755) comM 3878319..3879377 (-) 1059 WP_016944654.1 pilus assembly protein PilM Machinery gene
  JH280_RS16830 (JH280_16760) - 3879593..3882019 (+) 2427 WP_274347489.1 penicillin-binding protein 1A -
  JH280_RS16835 (JH280_16765) - 3882456..3883106 (+) 651 WP_042597625.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37620.24 Da        Isoelectric Point: 4.3924

>NTDB_id=523210 JH280_RS16825 WP_016944654.1 3878319..3879377(-) (comM) [Xanthomonas campestris strain 5053]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=523210 JH280_RS16825 WP_016944654.1 3878319..3879377(-) (comM) [Xanthomonas campestris strain 5053]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTTATTGGTGTCGACATCAGTTCCACTGCGGTCAAGCTATTGCAGCTGTC
GCGCAGCGGAAATCGTTTTCGCGTGGAACATTACGCTGTGGAACCGTTGCCGCCGAACGCGGTGGTAGAAAAGAACATCG
TCGAAGTCGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGTAGCAAGGCCAAGAACGCGGCAGCGGCC
GTGGCTGGCTCGGCGGTGATCACCAAGCTGATCCCCATGCCGGCGGATCTGGACGATAGCGATCTGGAAGCCCAGGTCGA
GCTGGAAGCCACCAACTACATCCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCGGCGTCGCGTTCGGAAAACGTTGAGCTGCGCCAATCGGCGCTGGAGCTCGGC
GGCCTGGTCGCTAAGGTGATGGACGTGGAGGCCTTTGCGGTCGAGAACGCCTTCGCACTGGTCGCCAGCGAATTGCCGGT
TGCCGCTGATGCGGTGGTGGCGCTGGTGGATATCGGCGCGACCATGACCACGCTCAGCGTGCTGCGCTCCGGGCGCAGCC
TCTACAGCCGCGAGCAGGTGTTCGGTGGCAAGCAGCTCACCGACGAAGTGATGCGCCGCTACGGCCTGACCTATGAAGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGCCTGCCGGAGAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAGGAAGCGACGGT
GCAGCAGATCAGCCGCCTGTTGCAGTTCTTCTATGCGGGCAGCGAATTCAATCGTGTTGATTGCATCGTGCTGGCAGGCG
GCTGCGCCGCGTTGTCGCGCCTGCCGGAGATGGTGGAAGAACAGTTGGGCGTGACCACCGTGGTCGCCAACCCGCTGGCA
CAGATGACGCTGGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

50.997

99.716

0.509
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472