Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   J6O02_RS06400 Genome accession   NZ_CP081701
Coordinates   1269509..1270246 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain AH02     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1264509..1275246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6O02_RS06370 (J6O02_06335) yfiL 1264668..1265033 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  J6O02_RS06375 (J6O02_06340) aroF 1265242..1266312 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  J6O02_RS06380 (J6O02_06345) tyrA 1266323..1267444 (+) 1122 WP_000225212.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  J6O02_RS06385 (J6O02_06350) pheA 1267487..1268647 (-) 1161 WP_000200119.1 bifunctional chorismate mutase/prephenate dehydratase -
  J6O02_RS06390 (J6O02_06355) pheL 1268746..1268793 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  J6O02_RS06395 (J6O02_06360) raiA 1268897..1269238 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  J6O02_RS06400 (J6O02_06365) comL 1269509..1270246 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  J6O02_RS06405 (J6O02_06370) rluD 1270381..1271361 (+) 981 WP_040064518.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  J6O02_RS06410 (J6O02_06375) yfiH 1271358..1272089 (+) 732 WP_040064519.1 purine nucleoside phosphorylase YfiH -
  J6O02_RS06415 (J6O02_06380) clpC 1272219..1274792 (+) 2574 WP_040064520.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=523201 J6O02_RS06400 WP_000197686.1 1269509..1270246(-) (comL) [Escherichia coli strain AH02]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=523201 J6O02_RS06400 WP_000197686.1 1269509..1270246(-) (comL) [Escherichia coli strain AH02]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTTATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376