Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JH280_RS14695 Genome accession   NZ_CP066922
Coordinates   3363230..3363751 (-) Length   173 a.a.
NCBI ID   WP_014508420.1    Uniprot ID   -
Organism   Xanthomonas campestris strain 5053     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3358230..3368751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH280_RS14670 (JH280_14615) - 3358588..3359964 (-) 1377 WP_228438657.1 HAMP domain-containing sensor histidine kinase -
  JH280_RS14675 (JH280_14620) - 3359961..3360644 (-) 684 WP_202975411.1 response regulator transcription factor -
  JH280_RS14680 (JH280_14625) - 3360784..3361755 (-) 972 WP_274347301.1 aspartyl/asparaginyl beta-hydroxylase domain-containing protein -
  JH280_RS14685 (JH280_14630) - 3361814..3362620 (-) 807 WP_274347302.1 MipA/OmpV family protein -
  JH280_RS14690 - 3362619..3363038 (+) 420 WP_274347303.1 hypothetical protein -
  JH280_RS14695 (JH280_14640) ssb 3363230..3363751 (-) 522 WP_014508420.1 single-stranded DNA-binding protein Machinery gene
  JH280_RS14700 (JH280_14645) - 3364034..3365032 (+) 999 WP_070690369.1 polyprenyl synthetase family protein -
  JH280_RS14705 (JH280_14650) - 3365272..3366072 (-) 801 WP_274347304.1 dienelactone hydrolase family protein -
  JH280_RS14710 (JH280_14655) murD 3366219..3367625 (-) 1407 WP_274347305.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18659.56 Da        Isoelectric Point: 5.3177

>NTDB_id=523201 JH280_RS14695 WP_014508420.1 3363230..3363751(-) (ssb) [Xanthomonas campestris strain 5053]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGGMGGDRPQRAQAPRQQQGGGGGGGGGQDYAPRRQQPAQQQSA
PPMDDFADDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=523201 JH280_RS14695 WP_014508420.1 3363230..3363751(-) (ssb) [Xanthomonas campestris strain 5053]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGAAGGCAATAACCAGGAACGCACCGAGTGGC
ACCGCGTGGTGTTTTTTGGAAAATTGGGCGAGATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
GAGCTGCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACAGCACCGATATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGCGGTGAAGGCGGCGGTGGCGGCGGCATGGGCGGCGATCGCCCGCAGCGCGCGCAGGCCCCGCGCCAGC
AGCAGGGTGGCGGCGGTGGTGGTGGCGGCGGTCAGGACTACGCACCGCGCCGTCAGCAACCGGCCCAGCAGCAGTCGGCG
CCGCCGATGGACGATTTTGCGGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

45.989

100

0.497
  ssb Glaesserella parasuis strain SC1401

45.902

100

0.486
  ssb Neisseria meningitidis MC58

46.629

100

0.48
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.48