Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JH283_RS07165 Genome accession   NZ_CP066921
Coordinates   1716885..1717409 (+) Length   174 a.a.
NCBI ID   WP_228944690.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. raphani strain 5055     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1711885..1722409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH283_RS07150 (JH283_07100) murD 1713004..1714410 (+) 1407 WP_274299448.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  JH283_RS07155 (JH283_07105) - 1714563..1715363 (+) 801 WP_274299449.1 dienelactone hydrolase family protein -
  JH283_RS07160 (JH283_07110) - 1715605..1716603 (-) 999 WP_070690369.1 polyprenyl synthetase family protein -
  JH283_RS07165 (JH283_07115) ssb 1716885..1717409 (+) 525 WP_228944690.1 single-stranded DNA-binding protein Machinery gene
  JH283_RS07170 (JH283_07120) - 1717595..1717897 (+) 303 WP_225443885.1 hypothetical protein -
  JH283_RS07175 (JH283_07125) - 1717901..1720429 (+) 2529 WP_116923553.1 AAA family ATPase -
  JH283_RS07180 (JH283_07130) - 1720434..1721729 (+) 1296 WP_181920256.1 McrC family protein -
  JH283_RS07185 (JH283_07135) - 1722197..1722331 (+) 135 WP_256267714.1 hypothetical protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18716.61 Da        Isoelectric Point: 5.3177

>NTDB_id=523184 JH283_RS07165 WP_228944690.1 1716885..1717409(+) (ssb) [Xanthomonas campestris pv. raphani strain 5055]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGGMGGDRPQRAQAPRQQQGGGGGGGGGGQDYAPRRQQPAQQQS
APPMDDFADDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=523184 JH283_RS07165 WP_228944690.1 1716885..1717409(+) (ssb) [Xanthomonas campestris pv. raphani strain 5055]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGAAGGCAATAACCAGGAACGCACCGAGTGGC
ATCGCGTGGTGTTTTTTGGAAAATTGGGAGAGATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
GAGCTGCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGCGGTGAAGGCGGCGGCGGTGGCGGCATGGGCGGCGATCGCCCGCAGCGCGCGCAGGCCCCGCGCCAGC
AGCAGGGTGGCGGCGGTGGTGGTGGTGGTGGCGGTCAGGACTACGCACCGCGCCGTCAGCAGCCGGCCCAGCAGCAGTCG
GCGCCGCCGATGGATGATTTTGCGGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

45.745

100

0.494
  ssb Glaesserella parasuis strain SC1401

46.409

100

0.483
  ssb Neisseria meningitidis MC58

44.886

100

0.454
  ssb Neisseria gonorrhoeae MS11

44.886

100

0.454