Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MRBBS_RS03005 Genome accession   NC_018268
Coordinates   661176..661772 (+) Length   198 a.a.
NCBI ID   WP_041635449.1    Uniprot ID   -
Organism   Marinobacter sp. BSs20148     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 656176..666772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRBBS_RS02995 (MRBBS_0637) uvrA 656749..659592 (-) 2844 WP_014869938.1 excinuclease ABC subunit UvrA -
  MRBBS_RS03000 (MRBBS_0638) - 659747..661117 (+) 1371 WP_014869939.1 MFS transporter -
  MRBBS_RS03005 (MRBBS_0639) ssb 661176..661772 (+) 597 WP_041635449.1 single-stranded DNA-binding protein Machinery gene
  MRBBS_RS20200 - 661935..663079 (+) 1145 Protein_606 DUF3141 domain-containing protein -
  MRBBS_RS20390 - 663060..663512 (+) 453 Protein_607 DUF3141 domain-containing protein -
  MRBBS_RS19860 - 663605..663922 (+) 318 WP_227497700.1 hypothetical protein -
  MRBBS_RS03015 (MRBBS_0641) ntrC 663977..665401 (-) 1425 WP_014869942.1 nitrogen regulation protein NR(I) -
  MRBBS_RS03020 (MRBBS_0642) glnL 665398..666540 (-) 1143 WP_014869943.1 nitrogen regulation protein NR(II) -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21836.94 Da        Isoelectric Point: 4.7895

>NTDB_id=52309 MRBBS_RS03005 WP_041635449.1 661176..661772(+) (ssb) [Marinobacter sp. BSs20148]
MARGINKVILIGNLGQDPDTRYTPNGNAVVNLSIATDESYKDRQTGQMVPKTEWHKIVMFGKVAEVAGQYLRKGSKIYVE
GKLQTRKWQNKDGQDVYTTEVVVDISGQMQMLDSRNSDGGGMNQGQGQGQQGQGQPQNRPQQAPARPQNANQPPQDDGGY
NQGSQNENYNQQPVNAPSSPQKNTMPDPVDDFDDDIPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=52309 MRBBS_RS03005 WP_041635449.1 661176..661772(+) (ssb) [Marinobacter sp. BSs20148]
ATGGCACGAGGCATCAATAAAGTCATTCTAATTGGCAACCTGGGGCAAGACCCAGACACCCGTTATACCCCCAACGGCAA
CGCCGTGGTTAATCTGAGTATAGCCACCGACGAAAGCTATAAAGACCGTCAAACCGGTCAAATGGTGCCAAAAACCGAAT
GGCACAAAATTGTCATGTTCGGCAAAGTGGCGGAAGTAGCGGGCCAGTACCTGCGCAAAGGTTCGAAGATTTATGTTGAA
GGCAAACTGCAAACCCGCAAATGGCAGAACAAGGACGGCCAAGACGTTTACACCACCGAAGTGGTTGTGGATATCAGCGG
CCAGATGCAGATGTTGGACAGCCGCAATAGTGACGGCGGCGGCATGAACCAGGGCCAAGGGCAGGGCCAACAAGGTCAAG
GCCAGCCGCAAAATCGCCCGCAGCAGGCGCCGGCGCGTCCACAGAATGCCAATCAGCCTCCGCAAGACGATGGCGGCTAT
AATCAGGGCTCCCAGAACGAAAATTACAATCAGCAACCGGTCAACGCTCCGTCATCGCCGCAGAAAAACACCATGCCAGA
TCCGGTGGATGATTTTGATGATGATATTCCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.764

100

0.53
  ssb Vibrio cholerae strain A1552

49.754

100

0.51
  ssb Neisseria meningitidis MC58

43.367

98.99

0.429
  ssb Neisseria gonorrhoeae MS11

43.367

98.99

0.429

Multiple sequence alignment