Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   JGZ15_RS03735 Genome accession   NZ_CP066884
Coordinates   845037..845753 (-) Length   238 a.a.
NCBI ID   WP_200361194.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain HSP080     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 840037..850753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGZ15_RS12200 - 841090..841204 (-) 115 Protein_729 ribose transporter RbsU -
  JGZ15_RS03720 (JGZ15_03720) - 841542..842489 (+) 948 WP_063278589.1 LacI family DNA-binding transcriptional regulator -
  JGZ15_RS03725 (JGZ15_03725) - 842545..844029 (+) 1485 WP_187470855.1 sucrose-6-phosphate hydrolase -
  JGZ15_RS03730 (JGZ15_03730) - 844033..844977 (+) 945 WP_200265295.1 carbohydrate kinase -
  JGZ15_RS03735 (JGZ15_03735) agrA 845037..845753 (-) 717 WP_200361194.1 LytTR family DNA-binding domain-containing protein Regulator
  JGZ15_RS03740 (JGZ15_03740) - 845767..846630 (-) 864 WP_233276610.1 sensor histidine kinase -
  JGZ15_RS03745 (JGZ15_03745) - 847082..847219 (-) 138 WP_020219911.1 cyclic lactone autoinducer peptide -
  JGZ15_RS03750 (JGZ15_03750) - 847221..847787 (-) 567 WP_200361195.1 accessory gene regulator AgrB -
  JGZ15_RS03760 (JGZ15_03760) - 848545..849348 (-) 804 WP_200361196.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 28045.95 Da        Isoelectric Point: 5.4333

>NTDB_id=522938 JGZ15_RS03735 WP_200361194.1 845037..845753(-) (agrA) [Staphylococcus pseudintermedius strain HSP080]
MKILICEDDPKQRERMVSIIENYIMIEEKPMKIELATNDPYAILETSKNMTDIGXYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVVAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSYVLNRRNITSVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=522938 JGZ15_RS03735 WP_200361194.1 845037..845753(-) (agrA) [Staphylococcus pseudintermedius strain HSP080]
ATGAAAATTTTGATTTGTGAGGATGATCCTAAACAACGCGAACGTATGGTGTCCATTATTGAAAACTATATTATGATTGA
AGAGAAGCCGATGAAAATTGAGCTTGCTACCAATGACCCTTATGCTATCTTAGAAACTTCTAAAAACATGACTGATATTG
GTNGCTACTTTTTAGATATTCAATTAGAGTCTGATATTAACGGGATTAAATTAGGGAGCGAAATTCGTAAGCACGATCCT
GTTGGGAATATTATTTTTGTGACGAGTCATAGTGAGCTGACGTACTTGACTTTTGTCTATAAAGTGGTCGCCATGGATTT
TATTTTTAAAGATGATCCTGAAGAATTAAGGACACGCATTATCGATTGTTTAGAAACAGCATTAAAACGGCTTGATTTAT
TAACAAAAGATCATACTGTTGAAACTTTGGAACTCAAACGTGGAACCAGCTCGGTTTACGTGAACTATGACGACGTGATG
TTTTTCGAGTCCTCACCGAAGTCACATCGTTTAATCGCGCATTTAGACAATCGTCAAATCGAATTTTACGGCAATTTGAA
AGAGTTAGCTCAACTCGATGATCGATTCTTCAGATGCCACAACAGTTATGTGCTAAACAGAAGAAATATTACAAGTGTCG
ATACGAAAGAACGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTGTCGGTGCGTAATTTGAAGAAAATTTAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(152-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

82.353

100

0.824