Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JHL13_RS20370 Genome accession   NZ_CP066844
Coordinates   4317217..4317753 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain Z30     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4312217..4322753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHL13_RS20350 (JHL13_20220) soxR 4313945..4314409 (-) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -
  JHL13_RS20355 (JHL13_20225) soxS 4314495..4314818 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  JHL13_RS20360 (JHL13_20230) pdeC 4314821..4316407 (-) 1587 WP_000019515.1 c-di-GMP phosphodiesterase PdeC -
  JHL13_RS20365 (JHL13_20235) yjcB 4316837..4317118 (+) 282 WP_001295689.1 YjcB family protein -
  JHL13_RS20370 (JHL13_20240) ssb 4317217..4317753 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JHL13_RS20375 (JHL13_20245) uvrA 4318008..4320830 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  JHL13_RS20380 (JHL13_20250) yjbR 4320865..4321221 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  JHL13_RS20385 (JHL13_20255) yjbQ 4321225..4321641 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  JHL13_RS20390 (JHL13_20260) aphA 4321752..4322465 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=522881 JHL13_RS20370 WP_000168305.1 4317217..4317753(-) (ssb) [Escherichia coli strain Z30]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=522881 JHL13_RS20370 WP_000168305.1 4317217..4317753(-) (ssb) [Escherichia coli strain Z30]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GTGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489