Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JH476_RS14050 Genome accession   NZ_CP066836
Coordinates   2906370..2906906 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain Ec-FL1-1X     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2901370..2911906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH476_RS14030 (JH476_13975) soxR 2903099..2903563 (-) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -
  JH476_RS14035 (JH476_13980) soxS 2903649..2903972 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  JH476_RS14040 (JH476_13985) pdeC 2903978..2905561 (-) 1584 WP_000019571.1 c-di-GMP phosphodiesterase PdeC -
  JH476_RS14045 (JH476_13990) yjcB 2905990..2906271 (+) 282 WP_001295689.1 YjcB family protein -
  JH476_RS14050 (JH476_13995) ssb 2906370..2906906 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JH476_RS14055 (JH476_14000) uvrA 2907161..2909983 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  JH476_RS14060 (JH476_14005) yjbR 2910018..2910374 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  JH476_RS14065 (JH476_14010) yjbQ 2910378..2910794 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  JH476_RS14070 (JH476_14015) aphA 2910905..2911618 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=522827 JH476_RS14050 WP_000168305.1 2906370..2906906(-) (ssb) [Escherichia coli strain Ec-FL1-1X]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=522827 JH476_RS14050 WP_000168305.1 2906370..2906906(-) (ssb) [Escherichia coli strain Ec-FL1-1X]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCTGGTCAGGATCGCTACACCACAGAAGTTGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489