Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JH254_RS14870 Genome accession   NZ_CP066813
Coordinates   3193158..3193727 (-) Length   189 a.a.
NCBI ID   WP_010674212.1    Uniprot ID   A0A081LN46
Organism   Aeromonas caviae strain Aero52     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3181519..3193727 3193158..3193727 within 0


Gene organization within MGE regions


Location: 3181519..3193727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH254_RS14835 (JH254_14835) - 3184561..3185022 (+) 462 WP_234035422.1 antitoxin Xre/MbcA/ParS toxin-binding domain-containing protein -
  JH254_RS14840 (JH254_14840) - 3185082..3187325 (-) 2244 WP_200163878.1 AAA family ATPase -
  JH254_RS14845 (JH254_14845) - 3187322..3187828 (-) 507 WP_134997595.1 hypothetical protein -
  JH254_RS14850 (JH254_14850) - 3187825..3188244 (-) 420 WP_134997596.1 hypothetical protein -
  JH254_RS14855 (JH254_14855) - 3188241..3190304 (-) 2064 WP_223930587.1 integrase -
  JH254_RS14860 (JH254_14860) - 3190301..3191782 (-) 1482 WP_200163879.1 site-specific integrase -
  JH254_RS14865 (JH254_14865) - 3191804..3192997 (-) 1194 WP_200163880.1 tyrosine-type recombinase/integrase -
  JH254_RS14870 (JH254_14870) ssb 3193158..3193727 (-) 570 WP_010674212.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20813.18 Da        Isoelectric Point: 5.9247

>NTDB_id=522757 JH254_RS14870 WP_010674212.1 3193158..3193727(-) (ssb) [Aeromonas caviae strain Aero52]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGGQGMGGQSSQGNWGQPQQAAPQQNMQRPAAPQQNMQPQG
GYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=522757 JH254_RS14870 WP_010674212.1 3193158..3193727(-) (ssb) [Aeromonas caviae strain Aero52]
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACTAACATCACCCTGGCCACCTCCGATACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGCACCG
AATGGCACCGTGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCCGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAGCTCCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACCGAGGTGCTGGTCGACAGCTT
CACCGGTGTGATGCAGATGCTGGGTGGCCGTCCGCAGGGCGGTGGCCAGGGCATGGGCGGCCAGTCATCCCAGGGCAACT
GGGGCCAGCCGCAACAGGCTGCACCGCAACAGAACATGCAACGTCCTGCTGCCCCGCAGCAGAACATGCAACCGCAAGGC
GGTTACGGCCGTCCGGCCCAGCAGCCGCAATCCGCCCCGCCGGTCTACAACGAACCGCCGATGGATTTCGACGACGATAT
TCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081LN46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

68.912

100

0.704
  ssb Glaesserella parasuis strain SC1401

54.011

98.942

0.534
  ssb Neisseria meningitidis MC58

47.34

99.471

0.471
  ssb Neisseria gonorrhoeae MS11

46.774

98.413

0.46