Detailed information NTG0522671

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: JG479_RS14375
• Genome accession: NZ_CP066804
• Coordinates: 3233121..3234014 (+)
• Length: 297 a.a.
• NCBI ID: WP_200219553.1
• Uniprot ID: -
• Organism: Pseudoalteromonas sp. LC2018020214
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3228121..3239014

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JG479_RS14355 (JG479_14355)	nadC	3228484..3229329 (+)	846	WP_200219550.1	carboxylating nicotinate-nucleotide diphosphorylase	-
JG479_RS14360 (JG479_14360)	-	3229819..3230232 (+)	414	WP_200219551.1	pilin	-
JG479_RS14365 (JG479_14365)	-	3230296..3231639 (+)	1344	WP_200219552.1	O-antigen ligase family protein	-
JG479_RS14370 (JG479_14370)	pilC	3231728..3232957 (+)	1230	WP_024597567.1	type II secretion system F family protein	Machinery gene
JG479_RS14375 (JG479_14375)	pilD	3233121..3234014 (+)	894	WP_200219553.1	A24 family peptidase	Machinery gene
JG479_RS14380 (JG479_14380)	coaE	3234016..3234657 (+)	642	WP_200219554.1	dephospho-CoA kinase	-
JG479_RS14385 (JG479_14385)	pilB	3234784..3236460 (+)	1677	WP_149603263.1	type IV-A pilus assembly ATPase PilB	Machinery gene
JG479_RS14390 (JG479_14390)	yacG	3236563..3236793 (+)	231	WP_002957774.1	DNA gyrase inhibitor YacG	-
JG479_RS14395 (JG479_14395)	-	3236866..3237354 (-)	489	WP_039488264.1	Spy/CpxP family protein refolding chaperone	-
JG479_RS14400 (JG479_14400)	-	3237544..3238233 (+)	690	WP_002957776.1	response regulator	-

Sequence

Protein

• Length: 297 a.a.
• Molecular weight: 32866.22 Da
• Isoelectric Point: 8.1237

>NTDB_id=522671 JG479_RS14375 WP_200219553.1 3233121..3234014(+) (pilD) [Pseudoalteromonas sp. LC2018020214]
MQSIIEVMQSQLWFYLTTVGLVSLCIGSFLNVVIYRLPLMMQREWQSECRILLDDELTANKSKQANINKPFNLVKPNSTC
PKCKTAIKPWQNIPIISWLILKGKCASCSNPISARYPAVELITALLSLIVAYSFGATEQALLYIFVTWILVALTFIDIDH
MLLPDQLTLPLVWLALIASVMGYTITPTDAIIGAACGYLSLWSVFWLFKLLTGKEGMGYGDFKLLAVFGALLGWQSLLTI
ILLSSVVGAIIGIALLSIQGKDKATPIPFGPYLAIAGWITMLWGNQIQGTYFNLIGY

Nucleotide

• Length: 894 bp

>NTDB_id=522671 JG479_RS14375 WP_200219553.1 3233121..3234014(+) (pilD) [Pseudoalteromonas sp. LC2018020214]
ATGCAAAGTATTATTGAAGTAATGCAAAGCCAATTGTGGTTTTATTTAACCACCGTTGGCTTAGTCAGTTTGTGTATTGG
TAGTTTTTTAAATGTGGTTATTTATCGCTTACCGTTGATGATGCAACGTGAGTGGCAAAGCGAATGCCGCATATTGCTAG
ATGATGAGCTTACAGCTAATAAATCTAAGCAAGCCAATATCAATAAGCCTTTTAACTTAGTAAAACCCAACTCTACCTGC
CCTAAATGTAAAACAGCCATAAAGCCTTGGCAGAATATTCCTATTATTAGCTGGTTAATACTTAAAGGTAAATGCGCAAG
CTGCAGTAACCCTATTTCTGCTCGATACCCTGCTGTAGAGCTAATTACTGCCCTATTAAGTTTAATTGTTGCCTATAGCT
TTGGTGCGACCGAGCAAGCCCTTTTATATATTTTTGTAACGTGGATTTTAGTAGCACTAACCTTTATTGATATTGACCAC
ATGCTACTGCCGGATCAGCTTACACTTCCGCTTGTTTGGCTTGCACTTATTGCTTCTGTAATGGGTTACACAATAACACC
AACCGATGCAATTATTGGTGCGGCTTGTGGATATTTAAGCTTATGGAGTGTGTTTTGGTTATTTAAGTTACTAACCGGTA
AAGAAGGCATGGGTTATGGCGATTTTAAATTGCTTGCTGTATTTGGTGCTTTGCTTGGCTGGCAGTCATTACTTACTATT
ATTCTGCTTTCGAGCGTAGTGGGTGCCATTATAGGTATTGCACTGTTAAGCATACAAGGTAAAGACAAAGCGACCCCTAT
CCCTTTTGGCCCTTATTTAGCGATTGCAGGCTGGATCACTATGCTTTGGGGCAACCAAATTCAAGGCACTTATTTTAATT
TAATTGGTTATTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-134)

• Type IV leader peptidase family (Peptidase_A24) (145-253)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	51.877	98.653	0.512
pilD	Acinetobacter nosocomialis M2	51.877	98.653	0.512
pilD	Vibrio campbellii strain DS40M4	51.525	99.327	0.512
pilD	Vibrio cholerae strain A1552	51.195	98.653	0.505
pilD	Neisseria gonorrhoeae MS11	45.865	89.562	0.411