Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GIY62_RS08465 Genome accession   NZ_CP066798
Coordinates   1836948..1837517 (-) Length   189 a.a.
NCBI ID   WP_304992159.1    Uniprot ID   -
Organism   Burkholderia plantarii strain KACC 18964     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1831948..1842517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GIY62_RS08425 (GIY62_08400) - 1832319..1832786 (-) 468 WP_042626020.1 MarR family winged helix-turn-helix transcriptional regulator -
  GIY62_RS08430 (GIY62_08405) - 1832821..1833261 (-) 441 WP_042626021.1 MarR family winged helix-turn-helix transcriptional regulator -
  GIY62_RS08435 (GIY62_08410) - 1833429..1834343 (-) 915 WP_042626022.1 LysR family transcriptional regulator -
  GIY62_RS08440 (GIY62_08415) - 1834718..1835029 (-) 312 Protein_1664 transposase -
  GIY62_RS08445 (GIY62_08420) - 1835045..1835437 (-) 393 WP_304992156.1 hypothetical protein -
  GIY62_RS08450 (GIY62_08425) - 1835446..1836033 (-) 588 WP_304992157.1 hypothetical protein -
  GIY62_RS08455 (GIY62_08430) - 1836034..1836360 (-) 327 WP_304992158.1 hypothetical protein -
  GIY62_RS08460 (GIY62_08435) - 1836512..1836844 (+) 333 Protein_1668 hypothetical protein -
  GIY62_RS08465 (GIY62_08440) ssb 1836948..1837517 (-) 570 WP_304992159.1 single-stranded DNA-binding protein Machinery gene
  GIY62_RS08470 (GIY62_08445) - 1837597..1838784 (-) 1188 WP_042626025.1 MFS transporter -
  GIY62_RS08475 (GIY62_08450) uvrA 1839012..1841882 (+) 2871 WP_055139268.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 19061.78 Da        Isoelectric Point: 5.3322

>NTDB_id=522616 GIY62_RS08465 WP_304992159.1 1836948..1837517(-) (ssb) [Burkholderia plantarii strain KACC 18964]
MASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGDFKEMTEWHRVAFFGRLAEIVNEYLKKGSSVYIEG
RLRTRKWQGQDGQDRYSTEIVADQMQMLGGRGGAGGGGGGDEGYGGGGGGGYGGGGGGRGGDMERGGGGGRAAGGGGGAS
RGGSGGGGSSRPSQPAGGGFDEMDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=522616 GIY62_RS08465 WP_304992159.1 1836948..1837517(-) (ssb) [Burkholderia plantarii strain KACC 18964]
ATGGCATCCGTCAACAAGGTCATTCTCGTCGGCAATCTGGGCGCCGACCCCGAAGTGCGCTACCTGCCAAGCGGCGACGC
GGTGGCGAACATCCGCCTCGCGACGACCGATCGCTACAAGGACAAGGCGAGCGGCGATTTCAAGGAAATGACCGAGTGGC
ACCGCGTGGCGTTCTTCGGCCGGCTGGCCGAGATCGTCAACGAGTACCTGAAGAAGGGCTCGTCGGTGTACATCGAAGGG
CGCCTGCGCACGCGCAAGTGGCAGGGCCAGGACGGCCAGGACCGTTACTCGACCGAAATCGTCGCGGACCAGATGCAGAT
GCTGGGCGGCCGTGGCGGCGCGGGCGGCGGCGGTGGTGGTGATGAGGGTTACGGCGGTGGTGGTGGCGGCGGCTATGGTG
GTGGTGGTGGCGGCCGCGGCGGCGACATGGAGCGTGGTGGCGGCGGTGGCCGTGCTGCCGGTGGTGGCGGCGGTGCTTCA
CGCGGTGGTAGCGGCGGCGGCGGTTCGAGCCGCCCGAGCCAGCCGGCTGGTGGCGGGTTCGACGAGATGGATGACGATAT
TCCTTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.223

100

0.503
  ssb Glaesserella parasuis strain SC1401

46.114

100

0.471
  ssb Neisseria gonorrhoeae MS11

41.711

98.942

0.413
  ssb Neisseria meningitidis MC58

41.176

98.942

0.407