Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JET14_RS09790 Genome accession   NZ_CP066786
Coordinates   2077563..2078066 (+) Length   167 a.a.
NCBI ID   WP_200337843.1    Uniprot ID   A0A7T7HNP7
Organism   Martelella lutilitoris strain ZRK001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2072563..2083066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JET14_RS09780 (JET14_09780) - 2073574..2074377 (-) 804 WP_200337841.1 DUF72 domain-containing protein -
  JET14_RS09785 (JET14_09785) uvrA 2074394..2077315 (-) 2922 WP_200337842.1 excinuclease ABC subunit UvrA -
  JET14_RS09790 (JET14_09790) ssb 2077563..2078066 (+) 504 WP_200337843.1 single-stranded DNA-binding protein Machinery gene
  JET14_RS09795 (JET14_09795) - 2078301..2079179 (+) 879 WP_200337844.1 alpha/beta hydrolase -
  JET14_RS09800 (JET14_09800) - 2079186..2079830 (-) 645 WP_200337845.1 MarC family protein -
  JET14_RS09805 (JET14_09805) gyrA 2080064..2082862 (+) 2799 WP_200337846.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 17848.50 Da        Isoelectric Point: 5.3024

>NTDB_id=522548 JET14_RS09790 WP_200337843.1 2077563..2078066(+) (ssb) [Martelella lutilitoris strain ZRK001]
MAGSVNKVILVGNLGADPEIRRTQDGRPIANLRVATSETWRDRNSGERKERTEWHRVVIFNEGLCKVAEQYLRKGAKVYI
EGQLQTRKWTDQGGQDRYSTEVVLQGFNSTLTMLDGRGEGGGQGGGGFGGSQGGGYDDYGSQPASGGGRSSGGGGGFSQD
LDDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=522548 JET14_RS09790 WP_200337843.1 2077563..2078066(+) (ssb) [Martelella lutilitoris strain ZRK001]
ATGGCAGGTAGTGTAAACAAGGTCATCCTCGTCGGCAATCTCGGAGCGGATCCGGAGATCCGGCGTACCCAGGACGGCCG
GCCGATCGCCAATCTCAGGGTCGCAACCTCGGAAACCTGGCGTGACCGCAATTCCGGCGAACGCAAGGAGCGCACGGAGT
GGCACCGCGTCGTCATCTTCAATGAGGGCCTGTGCAAGGTCGCCGAGCAATATCTGCGCAAAGGCGCCAAGGTCTATATC
GAGGGCCAGCTGCAGACGCGCAAATGGACCGACCAGGGCGGCCAGGACCGGTATTCGACCGAAGTCGTTCTGCAGGGCTT
CAATTCGACGCTGACCATGCTCGACGGTCGCGGCGAAGGCGGCGGCCAGGGCGGCGGCGGCTTTGGCGGCAGCCAGGGCG
GCGGTTATGACGACTACGGCTCCCAGCCGGCCTCAGGCGGCGGCCGCAGCAGCGGTGGCGGCGGCGGTTTCTCGCAGGAC
CTCGACGACGACATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T7HNP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.601

100

0.545
  ssb Glaesserella parasuis strain SC1401

47.849

100

0.533
  ssb Neisseria gonorrhoeae MS11

40.223

100

0.431
  ssb Neisseria meningitidis MC58

40.223

100

0.431