Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JC200_RS11280 Genome accession   NZ_CP066784
Coordinates   2382251..2382748 (+) Length   165 a.a.
NCBI ID   WP_274436345.1    Uniprot ID   -
Organism   Alicyclobacillus sp. ALC3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2377251..2387748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC200_RS11250 (JC200_11250) - 2377994..2378533 (+) 540 WP_274436339.1 DUF4446 family protein -
  JC200_RS11255 (JC200_11255) yyaC 2378530..2379204 (-) 675 WP_274436340.1 spore protease YyaC -
  JC200_RS11260 (JC200_11260) - 2379309..2379896 (+) 588 WP_274436341.1 hypothetical protein -
  JC200_RS11265 (JC200_11265) - 2379957..2380190 (+) 234 WP_274436342.1 DUF951 domain-containing protein -
  JC200_RS11270 (JC200_11270) ychF 2380685..2381788 (+) 1104 WP_274436343.1 redox-regulated ATPase YchF -
  JC200_RS11275 (JC200_11275) rpsF 2381941..2382228 (+) 288 WP_274436344.1 30S ribosomal protein S6 -
  JC200_RS11280 (JC200_11280) ssbA 2382251..2382748 (+) 498 WP_274436345.1 single-stranded DNA-binding protein Machinery gene
  JC200_RS11285 (JC200_11285) rpsR 2382813..2383043 (+) 231 WP_274436346.1 30S ribosomal protein S18 -
  JC200_RS11290 (JC200_11290) - 2383303..2383608 (+) 306 WP_274436347.1 MazG-like family protein -
  JC200_RS11295 (JC200_11295) - 2383614..2384513 (+) 900 WP_274436348.1 DUF2232 domain-containing protein -
  JC200_RS11300 (JC200_11300) rplI 2384538..2384993 (+) 456 WP_274436349.1 50S ribosomal protein L9 -
  JC200_RS11305 (JC200_11305) dnaB 2385029..2386417 (+) 1389 WP_274436350.1 replicative DNA helicase -
  JC200_RS11310 (JC200_11310) - 2386525..2386854 (+) 330 WP_274436351.1 hypothetical protein -
  JC200_RS11315 (JC200_11315) - 2386856..2387224 (-) 369 WP_274436352.1 hypothetical protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18218.07 Da        Isoelectric Point: 4.6972

>NTDB_id=522533 JC200_RS11280 WP_274436345.1 2382251..2382748(+) (ssbA) [Alicyclobacillus sp. ALC3]
MLNRVILIGRLTRDPELRYTNSGTAVASFALAVDRQRPNQSGERETDFINIVVWQKQAELCAQYLHKGRLAAVDGRLQIR
SYENREGQKVNVAEVVAETVRFLDRGDSTAAPSNSGSYASNPGGGSAPSTQPRPQRPAEPRPQYEDDPFADDAQTIDISD
DDLPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=522533 JC200_RS11280 WP_274436345.1 2382251..2382748(+) (ssbA) [Alicyclobacillus sp. ALC3]
ATGCTAAACCGGGTGATTCTCATTGGCAGGTTGACGCGGGACCCAGAACTCAGGTACACAAACTCAGGCACGGCCGTGGC
GTCGTTTGCACTCGCAGTAGATCGACAGCGACCGAATCAGTCCGGAGAGCGTGAAACTGACTTCATTAACATTGTGGTCT
GGCAGAAACAAGCGGAGTTGTGCGCGCAGTACCTCCACAAGGGCCGCCTTGCGGCGGTAGACGGTCGGCTGCAGATTCGC
TCCTATGAGAATCGCGAAGGGCAGAAGGTCAATGTCGCGGAAGTAGTGGCAGAGACCGTTCGCTTCCTCGATAGGGGTGA
CTCTACCGCCGCTCCTTCGAACTCGGGTTCGTACGCATCGAACCCTGGTGGCGGGTCCGCACCGAGCACCCAGCCACGAC
CACAGCGTCCGGCTGAACCCCGGCCGCAGTACGAAGATGACCCATTCGCAGACGACGCACAAACCATTGATATTTCGGAT
GACGACCTCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.371

100

0.576
  ssb Latilactobacillus sakei subsp. sakei 23K

50

100

0.521
  ssb Neisseria meningitidis MC58

37.64

100

0.406
  ssb Neisseria gonorrhoeae MS11

36.364

100

0.388