Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RP6297_RS01450 Genome accession   NZ_CP066771
Coordinates   305755..306312 (+) Length   185 a.a.
NCBI ID   WP_037027654.1    Uniprot ID   -
Organism   Ralstonia pickettii strain K-288     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 300755..311312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RP6297_RS01435 (RP6297_00289) - 300871..301356 (-) 486 WP_004633365.1 adenosine-specific kinase -
  RP6297_RS01440 (RP6297_00290) uvrA 301437..304301 (-) 2865 WP_037027659.1 excinuclease ABC subunit UvrA -
  RP6297_RS01445 (RP6297_00291) - 304544..305707 (+) 1164 WP_051917714.1 MFS transporter -
  RP6297_RS01450 (RP6297_00292) ssb 305755..306312 (+) 558 WP_037027654.1 single-stranded DNA-binding protein Machinery gene
  RP6297_RS01460 (RP6297_00293) - 307003..308499 (-) 1497 WP_037027653.1 HAMP domain-containing sensor histidine kinase -
  RP6297_RS01465 (RP6297_00294) - 308496..309224 (-) 729 WP_004633344.1 response regulator transcription factor -
  RP6297_RS01470 (RP6297_00295) - 309357..310031 (+) 675 WP_037027650.1 cytochrome b/b6 domain-containing protein -
  RP6297_RS01475 (RP6297_00296) - 310040..310831 (+) 792 WP_037027648.1 molybdopterin-dependent oxidoreductase -
  RP6297_RS01480 (RP6297_00297) - 310952..311236 (+) 285 WP_199517402.1 pentapeptide MXKDX repeat protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 19102.78 Da        Isoelectric Point: 5.9741

>NTDB_id=522448 RP6297_RS01450 WP_037027654.1 305755..306312(+) (ssb) [Ralstonia pickettii strain K-288]
MASVNKVIIVGNLGADPETRYMPSGDAVTNIRVATTDRYKDKASGEMKEATEWHRVAFFGRLAEIAGEYLKKGSSVYIEG
RLKTRQWEKDGQKQYSTEIVADQMQMLGGRGGEGGGSSGGGGGGYSRGGEGGGGGYGGSRSQGQSQGQGGGYSRGGEGGG
GQGGGARRQAAPSNGFEDMDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=522448 RP6297_RS01450 WP_037027654.1 305755..306312(+) (ssb) [Ralstonia pickettii strain K-288]
ATGGCGTCCGTCAACAAAGTCATCATCGTCGGCAATCTCGGCGCCGATCCTGAAACGCGCTACATGCCCAGCGGCGACGC
TGTCACCAACATTCGCGTGGCAACCACCGACCGCTACAAGGACAAGGCCAGCGGCGAAATGAAGGAAGCCACCGAGTGGC
ACCGCGTCGCCTTCTTCGGCCGCCTGGCAGAAATTGCGGGCGAATACCTGAAGAAGGGCTCGTCGGTCTACATCGAAGGC
CGGCTCAAGACCCGTCAATGGGAAAAGGACGGCCAGAAGCAATACAGCACCGAGATCGTCGCAGACCAGATGCAGATGCT
CGGCGGCCGCGGCGGTGAGGGCGGCGGCAGCAGCGGTGGCGGTGGTGGTGGCTACTCGCGTGGCGGTGAAGGCGGCGGCG
GTGGTTACGGCGGTAGCCGTAGCCAAGGTCAAAGCCAAGGCCAAGGCGGCGGTTACTCGCGCGGCGGCGAAGGTGGCGGT
GGCCAAGGCGGTGGCGCGCGTCGCCAGGCGGCACCGTCGAACGGTTTTGAGGATATGGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.438

100

0.503
  ssb Glaesserella parasuis strain SC1401

47.449

100

0.503
  ssb Neisseria meningitidis MC58

43.316

100

0.438
  ssb Neisseria gonorrhoeae MS11

43.316

100

0.438