Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JFN94_RS14255 Genome accession   NZ_CP066769
Coordinates   3044195..3044749 (-) Length   184 a.a.
NCBI ID   WP_124831017.1    Uniprot ID   A0A7T6VE19
Organism   Burkholderia anthina strain BJQ0011     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3039195..3049749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFN94_RS14230 (JFN94_14230) - 3039604..3040785 (-) 1182 WP_199568527.1 acetyl-CoA C-acetyltransferase -
  JFN94_RS14235 (JFN94_14235) phaP 3041045..3041626 (-) 582 WP_124831021.1 TIGR01841 family phasin -
  JFN94_RS14240 (JFN94_14240) - 3042083..3042847 (-) 765 WP_124831019.1 ParA family protein -
  JFN94_RS14245 (JFN94_14245) - 3042919..3043542 (-) 624 WP_199568528.1 DNA-3-methyladenine glycosylase -
  JFN94_RS14250 (JFN94_14250) mug 3043529..3044080 (-) 552 WP_175762597.1 G/U mismatch-specific DNA glycosylase -
  JFN94_RS14255 (JFN94_14255) ssb 3044195..3044749 (-) 555 WP_124831017.1 single-stranded DNA-binding protein Machinery gene
  JFN94_RS14260 (JFN94_14260) - 3044853..3046043 (-) 1191 WP_199568529.1 MFS transporter -
  JFN94_RS14265 (JFN94_14265) uvrA 3046297..3049182 (+) 2886 WP_124827907.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 18812.64 Da        Isoelectric Point: 5.3400

>NTDB_id=522442 JFN94_RS14255 WP_124831017.1 3044195..3044749(-) (ssb) [Burkholderia anthina strain BJQ0011]
MASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGDFKEMTEWHRVAFFGRLAEIVSEYLKKGSSVYIEG
RIRTRKWQGQDGQDRYSTEIVADQMQMLGGRGGAGGGGGGGDEGGYGGGYGGGGGGRGGEQMERGGGGGGRAGAAPRGGA
GGGQSRPSAPAGGGFDEMDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=522442 JFN94_RS14255 WP_124831017.1 3044195..3044749(-) (ssb) [Burkholderia anthina strain BJQ0011]
ATGGCATCCGTCAACAAGGTCATCCTCGTCGGCAATCTCGGCGCCGATCCTGAAGTCCGTTACCTGCCGAGCGGCGACGC
GGTTGCGAACATTCGTCTCGCAACGACCGATCGCTACAAGGACAAGGCGAGCGGCGATTTCAAGGAAATGACCGAGTGGC
ACCGCGTCGCGTTTTTCGGCCGTCTCGCCGAAATCGTCAGCGAGTACCTGAAGAAGGGCTCGTCGGTCTATATCGAAGGC
CGCATCCGCACGCGCAAGTGGCAAGGCCAGGACGGCCAGGATCGCTATTCGACCGAAATCGTCGCGGATCAAATGCAGAT
GCTCGGCGGCCGCGGCGGTGCGGGCGGCGGCGGTGGTGGTGGTGACGAAGGCGGTTACGGCGGCGGCTACGGTGGTGGTG
GCGGCGGTCGCGGCGGCGAACAGATGGAGCGCGGTGGTGGTGGCGGTGGTCGTGCCGGCGCAGCGCCGCGCGGCGGTGCA
GGCGGCGGCCAGAGCCGTCCGAGCGCGCCGGCAGGCGGCGGCTTCGACGAGATGGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T6VE19

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.454

100

0.511
  ssb Glaesserella parasuis strain SC1401

46.196

100

0.462
  ssb Neisseria meningitidis MC58

42.935

100

0.429
  ssb Neisseria gonorrhoeae MS11

42.935

100

0.429