Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JG536_RS14095 Genome accession   NZ_CP066762
Coordinates   3055571..3056134 (-) Length   187 a.a.
NCBI ID   WP_011657951.1    Uniprot ID   Q0BBT0
Organism   Burkholderia ambifaria strain BJQ0010     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3050571..3061134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JG536_RS14070 (JG536_14070) phbB 3050611..3051354 (-) 744 WP_175669866.1 acetoacetyl-CoA reductase -
  JG536_RS14075 (JG536_14075) - 3051572..3052753 (-) 1182 WP_199569547.1 acetyl-CoA C-acetyltransferase -
  JG536_RS14080 (JG536_14080) phaP 3053030..3053611 (-) 582 WP_011657939.1 TIGR01841 family phasin -
  JG536_RS14085 (JG536_14085) - 3054089..3054853 (-) 765 WP_011657940.1 ParA family protein -
  JG536_RS14090 (JG536_14090) - 3055069..3055290 (+) 222 WP_012364725.1 hypothetical protein -
  JG536_RS14095 (JG536_14095) ssb 3055571..3056134 (-) 564 WP_011657951.1 single-stranded DNA-binding protein Machinery gene
  JG536_RS14100 (JG536_14100) - 3056238..3057425 (-) 1188 WP_034176676.1 MFS transporter -
  JG536_RS14105 (JG536_14105) uvrA 3057688..3060573 (+) 2886 WP_012364727.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 19013.82 Da        Isoelectric Point: 5.3400

>NTDB_id=522428 JG536_RS14095 WP_011657951.1 3055571..3056134(-) (ssb) [Burkholderia ambifaria strain BJQ0010]
MASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGDFKEMTEWHRVAFFGRLAEIVSEYLKKGSSVYIEG
RIRTRKWQGQDGQDRYSTEIVADQMQMLGGRGGAGGGGGGSDEGGYGGGYGGGGGGGRGGEQMERGGGGGGGRAGGAPRG
GAAGGGQSRPSAPAGGGFDEMDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=522428 JG536_RS14095 WP_011657951.1 3055571..3056134(-) (ssb) [Burkholderia ambifaria strain BJQ0010]
ATGGCATCCGTCAACAAGGTCATCCTCGTCGGCAATCTCGGCGCCGATCCTGAAGTCCGTTACCTGCCGAGCGGCGACGC
GGTTGCGAACATCCGTCTCGCGACGACCGATCGCTACAAGGACAAGGCGAGCGGCGATTTCAAGGAAATGACCGAGTGGC
ACCGCGTGGCGTTCTTCGGCCGTCTCGCCGAAATCGTCAGCGAATACCTGAAGAAGGGCTCGTCGGTCTATATCGAAGGC
CGCATCCGCACGCGCAAGTGGCAGGGCCAGGACGGCCAGGATCGCTACTCGACCGAAATCGTCGCCGACCAGATGCAGAT
GCTCGGCGGCCGCGGCGGCGCGGGCGGTGGCGGTGGCGGCAGTGACGAAGGCGGTTACGGCGGCGGCTACGGTGGTGGCG
GCGGCGGCGGTCGCGGCGGCGAGCAGATGGAGCGCGGCGGTGGCGGCGGTGGTGGCCGTGCCGGCGGCGCACCGCGCGGC
GGCGCAGCAGGCGGCGGCCAGAGCCGTCCGAGCGCGCCGGCAGGCGGCGGCTTCGATGAGATGGACGACGATATTCCGTT
CTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0BBT0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.739

100

0.508
  ssb Glaesserella parasuis strain SC1401

46.032

100

0.465
  ssb Neisseria gonorrhoeae MS11

43.784

98.93

0.433
  ssb Neisseria meningitidis MC58

43.243

98.93

0.428