Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JFJ84_RS06865 Genome accession   NZ_CP066739
Coordinates   1440507..1440971 (+) Length   154 a.a.
NCBI ID   WP_011609284.1    Uniprot ID   A0A9Q6Z0H2
Organism   Histophilus somni strain ASc-MMNZ-VFA-069     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1435507..1445971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFJ84_RS06855 (JFJ84_06850) - 1436270..1437325 (-) 1056 WP_011609282.1 rod shape-determining protein -
  JFJ84_RS06860 (JFJ84_06855) uvrA 1437497..1440328 (-) 2832 WP_012340239.1 excinuclease ABC subunit UvrA -
  JFJ84_RS06865 (JFJ84_06860) ssb 1440507..1440971 (+) 465 WP_011609284.1 single-stranded DNA-binding protein Machinery gene
  JFJ84_RS06870 (JFJ84_06865) metF 1441058..1441942 (-) 885 WP_012340238.1 methylenetetrahydrofolate reductase -
  JFJ84_RS06875 (JFJ84_06870) - 1442153..1442671 (-) 519 WP_012340237.1 ClbS/DfsB family four-helix bundle protein -
  JFJ84_RS06880 (JFJ84_06875) nagZ 1442700..1443746 (-) 1047 WP_012340236.1 beta-N-acetylhexosaminidase -
  JFJ84_RS06885 (JFJ84_06880) - 1443753..1444109 (-) 357 WP_012340235.1 YcfL family protein -
  JFJ84_RS06890 (JFJ84_06885) hinT 1444109..1444459 (-) 351 WP_012340234.1 purine nucleoside phosphoramidase -
  JFJ84_RS06895 (JFJ84_06890) focA 1444703..1445554 (+) 852 WP_012340233.1 formate transporter FocA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17419.34 Da        Isoelectric Point: 5.7904

>NTDB_id=522209 JFJ84_RS06865 WP_011609284.1 1440507..1440971(+) (ssb) [Histophilus somni strain ASc-MMNZ-VFA-069]
MAGVNKVIIVGNLGNAPEIRTMPNGDAVANISVATSESWIDKNTNERREITEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRSDRGQMGGYEPQQQPTYQSHSQPKPSIASPSPVDAPLDDDIPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=522209 JFJ84_RS06865 WP_011609284.1 1440507..1440971(+) (ssb) [Histophilus somni strain ASc-MMNZ-VFA-069]
ATGGCTGGAGTAAATAAAGTAATCATTGTTGGAAATCTTGGTAACGCTCCTGAAATTCGCACCATGCCAAACGGTGATGC
TGTTGCGAATATCAGTGTTGCAACAAGTGAAAGTTGGATTGATAAAAATACCAATGAACGCCGTGAAATTACAGAATGGC
ATCGCATCGTGTTTTATCGTCGTCAAGCAGAAGTGGCTGGAGAATATTTACGTAAAGGCTCAAAGGTTTATGTAGAAGGA
CGTTTAAGAACACGCAAATGGCAAGATCAAAATGGTCAAGATCGTTATACCACTGAAATTCAGGGCGATGTATTGCAAAT
GCTGGATAGTCGTTCAGATCGTGGACAAATGGGAGGATACGAACCTCAACAGCAACCAACCTACCAATCACATTCTCAAC
CTAAACCGAGCATTGCATCTCCATCACCTGTTGATGCTCCACTTGATGATGACATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

63.536

100

0.747
  ssb Vibrio cholerae strain A1552

52.247

100

0.604
  ssb Neisseria gonorrhoeae MS11

44.828

100

0.506
  ssb Neisseria meningitidis MC58

44.509

100

0.5